Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0244201 Lupinus albus HOM05D003337 ORTHO05D003808 2.2e-95 352.4 200 100.0
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 7.4e-75 284.3 201 83.6
Actinidia15665 Actinidia chinensis HOM05D003337 ORTHO05D003808 1.7e-74 283.1 202 82.7
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 1.2e-72 276.9 184 88.0
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 1.2e-72 276.9 184 89.1
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 1.5e-72 276.6 184 87.5
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 5.9e-72 274.6 184 88.0
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 2.9e-71 272.3 184 87.0
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 2.9e-71 272.3 184 87.0
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 5.0e-71 271.6 184 88.0
Ca_15750_v3 Cicer arietinum L. HOM05D003337 ORTHO05D003808 6.5e-71 271.2 217 71.0
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 1.1e-70 270.4 185 88.1
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 1.4e-70 270.0 186 87.6
Hma1.2p1_2800F.1_g328770 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 1.9e-70 269.6 202 77.2
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 2.5e-70 269.2 186 83.9
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 2.5e-70 269.2 184 84.8
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.2e-70 268.9 186 84.4
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 4.2e-70 268.5 184 75.5
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 7.2e-70 267.7 186 85.5
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 9.4e-70 267.3 185 85.4
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 1.2e-69 266.9 186 86.0
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 1.2e-69 266.9 186 86.0
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 2.1e-69 266.2 184 85.3
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 2.7e-69 265.8 187 84.5
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.6e-69 265.4 186 81.2
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 4.7e-69 265.0 186 81.2
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 4.7e-69 265.0 186 81.2
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 1.4e-68 263.5 182 85.2
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 1.8e-68 263.1 186 74.2
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 2.3e-68 262.7 186 74.7
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.3e-68 262.7 180 85.0
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 2.3e-68 262.7 180 85.0
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 3.0e-68 262.3 183 85.2
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 3.9e-68 261.9 185 83.8
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 8.8e-68 260.8 184 78.8
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 1.1e-67 260.4 184 83.7
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 1.5e-67 260.0 184 84.8
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 1.5e-67 260.0 184 84.8
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 2.0e-67 259.6 183 84.2
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 2.6e-67 259.2 182 86.3
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 4.4e-67 258.5 184 83.2
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 9.7e-67 257.3 186 80.6
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 2.2e-66 256.1 187 82.4
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 2.2e-66 256.1 182 75.8
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 3.7e-66 255.4 184 83.2
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 4.8e-66 255.0 187 81.8
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 4.8e-66 255.0 184 83.7
TAR383G0794 Trochodendron aralioides HOM05D003337 ORTHO05D003808 4.8e-66 255.0 188 71.3
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 6.3e-66 254.6 188 81.9
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 8.2e-66 254.2 181 73.5
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 1.4e-65 253.4 188 80.9
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 5.3e-65 251.5 182 80.2
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 9.1e-65 250.8 179 84.4
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.2e-64 250.4 187 81.8
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.6e-64 250.0 186 82.3
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 1.6e-64 250.0 186 81.7
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 5.9e-64 248.1 184 81.0
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 7.7e-64 247.7 187 80.2
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 1.0e-63 247.3 185 80.5
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.9e-63 245.7 185 76.8
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 8.5e-63 244.2 184 78.3
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 8.5e-63 244.2 185 80.5
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 1.1e-62 243.8 188 72.3
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 4.2e-62 241.9 193 79.8
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 7.2e-62 241.1 194 79.9
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 9.4e-62 240.7 185 80.5
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 1.2e-61 240.4 191 77.5
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 1.6e-61 240.0 189 70.4
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.7e-61 239.2 176 71.6
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 4.7e-61 238.4 189 77.2
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 8.0e-61 237.7 186 69.9
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.0e-60 237.3 193 79.3
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 2.3e-60 236.1 182 79.1
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 3.0e-60 235.7 186 67.2
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 6.7e-60 234.6 183 70.5
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 2.0e-59 233.0 187 76.5
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.6e-59 232.6 189 65.6
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 2.6e-59 232.6 185 66.5
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 3.3e-59 232.3 189 75.1
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 3.7e-58 228.8 193 74.6
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 3.7e-58 228.8 185 65.9
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 8.2e-58 227.6 177 79.1
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 4.1e-57 225.3 182 79.1
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 7.0e-57 224.6 183 75.4
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.0e-55 220.7 208 59.6
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 2.2e-55 219.5 172 71.5
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 8.5e-55 217.6 183 66.7
SEGI_13524 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 8.5e-55 217.6 188 64.9
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 1.5e-54 216.9 188 71.3
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 4.7e-53 211.8 189 62.4
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 6.1e-53 211.5 181 72.9
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 4.0e-52 208.8 181 64.6
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 6.8e-52 208.0 189 64.0
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 6.8e-52 208.0 189 64.0
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 4.4e-51 205.3 191 64.4
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 4.4e-51 205.3 190 71.6
Eucgr.L02163 Eucalyptus grandis HOM05D003337 ORTHO05D003808 1.4e-49 200.3 193 60.6
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 1.4e-49 200.3 195 68.7
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 2.4e-49 199.5 178 74.2
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 3.1e-49 199.1 188 62.2
Os02g0613400 Oryza sativa ssp. japonica HOM05D003337 ORTHO05D003808 4.1e-49 198.7 189 64.0
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 7.0e-49 198.0 185 69.2
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 1.0e-47 194.1 206 65.0
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 1.1e-46 190.7 187 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2463 Anthoceros agrestis HOM05D003337 ORTHO05D003808 9.5e-46 187.6 189 66.1
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 9.5e-46 187.6 199 64.3
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 1.0e-44 184.1 184 56.0
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.4e-44 183.7 188 64.4
Eucgr.L02898 Eucalyptus grandis HOM05D003337 ORTHO05D003808 4.0e-44 182.2 205 55.6
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 8.9e-44 181.0 191 57.6
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 4.4e-43 178.7 189 56.1
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 9.8e-43 177.6 196 63.8
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 2.8e-42 176.0 200 49.0
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 1.6e-40 170.2 187 55.6
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.0e-40 169.9 151 60.3
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 7.3e-38 161.4 187 55.1
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 7.3e-38 161.4 187 55.1
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 1.4e-36 157.1 183 53.6
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 1.4e-36 157.1 183 54.1
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 1.4e-36 157.1 183 53.6
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 1.8e-36 156.8 183 53.6
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 1.2e-35 154.1 179 54.2
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 1.5e-35 153.7 190 58.9
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 9.8e-35 151.0 196 59.7
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 9.8e-35 151.0 187 47.6
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 2.2e-34 149.8 185 51.9
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 1.4e-33 147.1 135 58.5
Eucgr.L02899 Eucalyptus grandis HOM05D003337 ORTHO05D003808 4.1e-33 145.6 109 70.6
SalBow2G2138 Salvia bowleyana HOM05D003337 ORTHO05D003808 7.3e-30 134.8 217 46.5
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 6.2e-29 131.7 197 48.2
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 6.2e-29 131.7 177 46.9
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 1.2e-27 127.5 186 48.9
CSS0025992 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 3.4e-27 125.9 153 49.7
CSS0031612 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 4.4e-27 125.6 139 51.8
MSTRG.11604 Avicennia marina HOM05D003337 ORTHO05D003808 5.8e-27 125.2 98 64.3
CSS0001606 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 9.8e-27 124.4 153 49.0
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 1.3e-26 124.0 137 51.8
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 2.4e-25 119.8 199 37.7
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 1.6e-24 117.1 137 56.9
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 1.6e-24 117.1 137 56.9
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 1.6e-24 117.1 130 57.7
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 1.9e-22 110.2 69 84.1
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 6.2e-21 105.1 64 85.9
Thecc.09G133400 Theobroma cacao HOM05D003337 ORTHO05D003808 2.6e-19 99.8 123 48.0
CSS0009940 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.4e-17 93.2 140 42.9
COL.COLO4_35177 Corchorus olitorius HOM05D003337 ORTHO05D003808 6.0e-16 88.6 147 40.8
SalBow2G3508 Salvia bowleyana HOM05D003337 ORTHO05D003808 8.6e-15 84.7 55 83.6
Potri.006G065300 Populus trichocarpa HOM05D003337 ORTHO05D003808 2.8e-13 79.7 123 38.2
HPP92_010003 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.5e-11 73.9 44 86.4
Oeu060140.1 Olea europaea HOM05D003337 ORTHO05D003808 2.0e-11 73.6 196 34.7
Hma1.2p1_0497F.1_g166430 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 1.2e-08 64.3 79 46.8


User provided reference genes

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