Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 7.3e-36 153.3 74 100.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.7e-14 81.6 45 84.4
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.7e-14 81.6 45 84.4
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 3.5e-14 81.3 45 84.4
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 6.0e-14 80.5 45 82.2
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 7.9e-14 80.1 44 84.1
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 7.9e-14 80.1 45 82.2
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.3e-13 78.6 45 80.0
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.0e-13 78.2 45 80.0
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 3.0e-13 78.2 45 80.0
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.0e-13 78.2 45 80.0
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 6.7e-13 77.0 45 77.8
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.7e-13 77.0 45 77.8
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 8.7e-13 76.6 45 80.0
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 8.7e-13 76.6 45 80.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.1e-12 76.3 45 73.3
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.5e-12 75.9 45 77.8
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.5e-12 75.9 45 75.6
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.9e-12 75.5 45 80.0
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.9e-12 75.5 45 73.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.9e-12 75.5 45 75.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.9e-12 75.5 45 75.6
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 75.6
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 2.5e-12 75.1 45 71.1
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 75.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 75.6
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 77.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 73.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 73.3
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 73.3
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 73.3
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 3.3e-12 74.7 44 77.3
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 3.3e-12 74.7 45 73.3
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 73.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 73.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 75.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 4.3e-12 74.3 46 78.3
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 75.6
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 75.6
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 4.3e-12 74.3 45 73.3
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.6e-12 73.9 45 73.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 5.6e-12 73.9 45 75.6
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 5.6e-12 73.9 45 75.6
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 5.6e-12 73.9 45 75.6
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 7.4e-12 73.6 45 68.9
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 7.4e-12 73.6 45 73.3
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 7.4e-12 73.6 45 71.1
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 7.4e-12 73.6 45 75.6
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 68.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 68.9
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 68.9
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 73.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 73.3
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 9.6e-12 73.2 45 71.1
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-11 72.8 45 73.3
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-11 72.8 45 73.3
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.3e-11 72.8 45 75.6
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.3e-11 72.8 45 75.6
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.6e-11 72.4 45 71.1
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 1.6e-11 72.4 35 91.4
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 1.6e-11 72.4 45 75.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.6e-11 72.4 45 75.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.1e-11 72.0 45 73.3
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.1e-11 72.0 45 75.6
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.8e-11 71.6 45 71.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.8e-11 71.6 46 76.1
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.8e-11 71.6 46 76.1
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.7e-11 71.2 45 68.9
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.2e-11 70.5 46 73.9
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 6.2e-11 70.5 46 71.7
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.2e-11 70.5 47 74.5
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 8.1e-11 70.1 46 76.1
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 8.1e-11 70.1 47 72.3
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 8.1e-11 70.1 46 76.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 1.8e-10 68.9 47 68.1
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.8e-10 68.9 47 74.5
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.8e-10 68.9 47 74.5
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.1e-10 68.2 47 72.3
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 3.1e-10 68.2 47 68.1
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 3.1e-10 68.2 42 69.0
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 3.1e-10 68.2 45 68.9
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 4.0e-10 67.8 45 68.9
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 4.0e-10 67.8 47 72.3
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 4.0e-10 67.8 47 72.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 72.3
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 72.3
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 72.3
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 72.3
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 72.3
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 5.3e-10 67.4 47 74.5
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 6.9e-10 67.0 47 70.2
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.5e-09 65.9 40 75.0
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.0e-09 65.5 56 57.1
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 7.6e-09 63.5 43 72.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 2.9e-08 61.6 43 69.8
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 6.5e-08 60.5 45 60.0
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.4e-07 59.3 42 69.0
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 9.3e-07 56.6 49 57.1
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.2e-06 56.2 35 65.7


User provided reference genes

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