Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.0e-176 621.7 306 100.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 6.8e-136 487.6 316 80.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 3.2e-117 425.6 302 74.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 6.2e-113 411.4 298 72.1
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.8e-112 409.8 310 70.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 8.9e-112 407.5 291 72.5
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 6.4e-110 401.4 303 70.3
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.6e-108 395.2 305 69.2
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 7.8e-108 394.4 302 68.9
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 7.3e-106 387.9 307 68.1
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 8.1e-105 384.4 305 67.9
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.2e-89 334.0 307 60.3
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.6e-89 333.6 311 59.8
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 8.1e-89 331.3 299 59.2
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.1e-88 330.9 306 60.1
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 3.1e-88 329.3 298 59.4
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.0e-88 328.9 302 60.9
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.5e-87 327.0 300 59.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.4e-87 325.5 300 59.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 5.8e-87 325.1 309 59.2
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 7.6e-87 324.7 292 58.9
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 7.6e-87 324.7 304 59.2
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 7.6e-87 324.7 310 60.6
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 9.9e-87 324.3 284 60.6
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.2e-86 323.2 300 60.0
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.2e-86 323.2 281 60.1
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 3.2e-85 319.3 309 59.2
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.2e-85 318.9 308 59.7
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 7.1e-85 318.2 301 59.1
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 9.3e-85 317.8 307 56.0
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 1.2e-84 317.4 295 60.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-84 317.0 297 60.3
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.1e-84 316.6 311 57.2
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-83 314.3 297 59.6
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-83 314.3 297 59.3
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.3e-83 313.9 300 57.3
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.0e-83 312.8 278 59.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 4.3e-82 308.9 298 56.7
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 4.3e-82 308.9 276 60.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 4.3e-82 308.9 311 55.9
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 4.3e-82 308.9 302 58.6
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 6.2e-81 305.1 301 54.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.1e-80 304.3 310 54.8
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 3.1e-80 302.8 298 54.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 3.1e-80 302.8 282 57.4
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 5.3e-80 302.0 308 57.1
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 6.9e-80 301.6 308 56.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 2.6e-79 299.7 277 58.5
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 5.8e-79 298.5 297 58.2
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 7.6e-79 298.1 297 56.9
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 9.9e-79 297.7 210 70.0
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.3e-78 297.4 304 55.9
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.3e-78 297.4 218 67.9
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.3e-78 297.4 305 56.1
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.2e-78 296.6 244 60.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 6.4e-78 295.0 305 55.4
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.1e-77 294.3 284 56.3
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.4e-77 293.1 238 62.2
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 3.2e-77 292.7 310 54.5
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 3.2e-77 292.7 211 69.2
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 5.4e-77 292.0 314 55.4
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.7e-76 289.7 293 56.0
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 3.5e-76 289.3 289 52.9
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 4.6e-76 288.9 306 55.6
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 7.9e-76 288.1 306 55.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 7.9e-76 288.1 310 53.9
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.3e-75 286.6 306 54.9
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 3.0e-75 286.2 281 57.3
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.0e-75 286.2 306 54.9
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.9e-75 285.8 202 69.3
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.7e-75 285.0 304 53.3
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.5e-74 283.9 298 55.0
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.5e-74 283.1 299 55.2
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.3e-74 282.7 304 55.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 5.6e-74 282.0 207 66.7
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 7.4e-74 281.6 310 52.9
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 9.6e-74 281.2 312 53.8
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.3e-73 280.8 303 54.5
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.7e-73 279.3 308 53.6
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 3.7e-73 279.3 317 53.9
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 3.7e-73 279.3 215 65.6
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.8e-73 278.9 298 54.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 4.8e-73 278.9 282 53.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 8.1e-73 278.1 202 68.8
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 8.1e-73 278.1 202 68.8
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 8.1e-73 278.1 286 56.6
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.8e-72 276.9 302 53.3
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.8e-72 276.9 302 53.3
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-71 274.2 203 68.0
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.0e-71 273.5 234 61.1
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.0e-71 273.5 337 49.9
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 4.5e-71 272.3 205 64.4
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 5.8e-71 271.9 317 50.2
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.3e-70 270.8 317 50.8
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 8.4e-70 268.1 302 52.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.9e-69 266.9 320 48.1
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 5.5e-69 265.4 306 50.7
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 9.3e-69 264.6 301 50.8
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.2e-68 264.2 253 54.9
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.2e-68 264.2 253 54.9
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 6.7e-67 258.5 208 60.6
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.3e-66 255.8 266 53.8
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.1e-65 253.4 250 54.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 6.2e-65 251.9 208 61.1
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 9.0e-64 248.1 267 51.3
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 2.0e-63 246.9 206 60.7
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.1e-61 241.1 207 58.5
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.3e-59 234.2 253 56.5
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 4.3e-58 229.2 199 56.3
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 6.9e-56 221.9 196 59.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.3e-54 217.6 211 54.5
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 5.1e-51 205.7 200 53.0
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.3e-49 201.1 231 46.8
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.8e-49 199.9 209 51.2
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.0e-46 191.4 160 62.5
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.8e-41 173.3 230 47.0
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.1e-40 169.5 208 48.1
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 9.1e-40 168.3 205 46.3
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.0e-38 164.9 211 44.1
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.8e-38 162.9 178 56.2
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.5e-37 161.0 239 40.2
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 5.5e-37 159.1 212 42.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.0e-36 155.2 169 52.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.8e-32 144.1 171 48.0
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 6.3e-25 119.0 114 57.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.5e-23 112.8 110 54.5
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 8.0e-20 102.1 131 45.8
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.3e-19 100.5 199 36.7
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.0e-19 100.1 179 39.1
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.0e-18 97.4 61 70.5
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 8.3e-17 92.0 78 62.8
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.0e-14 85.1 155 38.1
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.6e-12 76.6 63 55.6
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.0e-11 73.6 75 50.7


User provided reference genes

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