Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 3.0e-23 110.9 53 100.0
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 4.8e-21 103.6 53 90.6
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.4e-20 102.1 53 90.6
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 6.9e-20 99.8 53 84.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.2e-19 99.0 53 83.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 5.8e-19 96.7 53 81.1
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.1e-17 92.4 53 77.4
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 2.8e-13 77.8 53 66.0
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 4.0e-12 73.9 50 68.0
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.7e-10 68.6 47 66.0
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.7e-10 68.6 47 66.0
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.9e-10 67.0 49 61.2
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.9e-10 67.0 47 63.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 4.9e-10 67.0 45 68.9
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 6.4e-10 66.6 44 63.6
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 6.4e-10 66.6 50 58.0
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.4e-10 66.2 42 66.7
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 8.4e-10 66.2 42 66.7
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.1e-09 65.9 51 54.9
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.1e-09 65.9 50 58.0
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.4e-09 65.5 50 58.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.4e-09 65.5 45 60.0
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.9e-09 65.1 42 64.3
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.9e-09 65.1 47 63.8
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 3.2e-09 64.3 47 63.8
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 4.2e-09 63.9 49 55.1
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 5.5e-09 63.5 45 60.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.5e-09 63.5 50 56.0
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 7.1e-09 63.2 46 60.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 7.1e-09 63.2 48 56.2
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 1.2e-08 62.4 48 56.2
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.2e-08 62.4 46 60.9
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.2e-08 62.4 45 60.0
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.6e-08 62.0 51 51.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.6e-08 62.0 51 51.0
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.6e-08 62.0 43 60.5
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-08 61.6 51 49.0
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 2.1e-08 61.6 51 49.0
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 2.1e-08 61.6 50 58.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 2.1e-08 61.6 50 54.0
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.7e-08 61.2 51 49.0
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 2.7e-08 61.2 42 57.1
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.7e-08 61.2 46 58.7
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 3.5e-08 60.8 48 54.2
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 3.5e-08 60.8 48 56.2
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 3.5e-08 60.8 48 56.2
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 3.5e-08 60.8 48 56.2
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 4.6e-08 60.5 48 52.1
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 6.0e-08 60.1 47 57.4
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 6.0e-08 60.1 48 52.1
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 7.9e-08 59.7 42 57.1
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.0e-07 59.3 42 61.9
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 51.1
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 51.1
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 53.2
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 1.8e-07 58.5 58 46.6
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.8e-07 58.5 44 59.1
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.8e-07 58.5 43 58.1
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 3.0e-07 57.8 52 50.0
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 3.0e-07 57.8 48 52.1
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 5.1e-07 57.0 48 52.1
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-07 57.0 48 52.1
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-07 57.0 48 52.1
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 5.1e-07 57.0 44 56.8
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 5.1e-07 57.0 50 54.0
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 5.1e-07 57.0 56 50.0
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 6.7e-07 56.6 47 48.9
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 6.7e-07 56.6 47 48.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 6.7e-07 56.6 39 61.5
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 8.7e-07 56.2 47 48.9
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 8.7e-07 56.2 57 49.1
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 8.7e-07 56.2 37 64.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.1e-06 55.8 40 57.5
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-06 55.8 47 48.9
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.1e-06 55.8 47 48.9
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.1e-06 55.8 48 50.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.9e-06 55.1 44 56.8
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-06 54.7 47 46.8
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 2.5e-06 54.7 47 46.8
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 2.5e-06 54.7 47 46.8
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 3.3e-06 54.3 48 43.8
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.3e-06 54.3 42 54.8
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 5.6e-06 53.5 44 47.7
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 5.6e-06 53.5 39 56.4
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 5.6e-06 53.5 47 46.8
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 9.6e-06 52.8 39 53.8
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 9.6e-06 52.8 41 53.7


User provided reference genes

Program Settings