Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.0e-247 858.6 419 100.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.1e-205 719.9 419 83.8
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 5.7e-202 707.6 420 82.4
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.8e-201 705.3 424 81.8
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 5.9e-199 697.6 420 82.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.7e-198 696.0 420 81.7
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.1e-197 693.3 421 82.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 9.1e-192 673.7 441 74.6
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.7e-191 672.2 445 74.2
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.7e-190 669.5 423 77.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 6.5e-190 667.5 421 78.6
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.2e-186 656.8 420 77.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 3.2e-181 638.6 422 72.7
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.6e-178 629.0 427 71.2
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 3.4e-178 628.6 427 72.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 7.0e-176 620.9 417 71.2
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.2e-176 620.5 423 70.9
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.5e-175 618.6 425 70.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 7.8e-175 617.5 430 70.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.9e-174 615.5 428 70.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.5e-173 612.5 435 70.3
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.3e-173 612.1 423 70.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 9.5e-173 610.5 416 68.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 9.5e-173 610.5 415 70.8
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.2e-172 610.1 421 70.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 4.7e-172 608.2 419 72.3
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.1e-172 607.8 423 69.5
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 6.1e-172 607.8 432 69.2
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.0e-171 607.1 437 69.6
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.4e-171 606.7 423 69.5
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 8.9e-171 604.0 424 69.8
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.5e-170 603.2 419 68.7
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 9.8e-170 600.5 424 69.8
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.3e-169 600.1 425 69.2
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.9e-169 599.0 422 68.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 6.4e-169 597.8 435 68.3
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 7.3e-165 584.3 429 66.0
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 9.5e-165 583.9 433 65.8
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.6e-164 583.2 430 67.0
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 3.6e-164 582.0 418 65.8
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.0e-163 580.5 419 65.2
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 5.2e-163 578.2 422 65.2
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 6.8e-163 577.8 417 65.5
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.4e-162 575.5 422 68.0
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 4.4e-162 575.1 422 64.7
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 7.5e-162 574.3 420 64.8
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 7.5e-162 574.3 419 64.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.7e-161 573.2 416 64.7
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.9e-161 572.4 382 71.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.9e-161 571.6 416 66.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.9e-160 569.7 420 64.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.9e-160 569.7 480 61.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.4e-160 569.3 419 64.7
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.4e-160 569.3 416 66.3
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.1e-160 568.5 419 64.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 9.2e-160 567.4 402 65.4
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.6e-159 566.6 426 65.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 3.5e-159 565.5 419 64.2
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 4.6e-159 565.1 423 65.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.0e-158 563.9 419 65.2
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.0e-158 562.4 420 65.5
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.9e-158 562.0 423 63.1
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.0e-158 561.6 418 62.7
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.1e-157 560.5 417 66.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.5e-157 560.1 414 65.5
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.3e-157 558.5 427 65.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 5.6e-157 558.1 434 65.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-156 556.6 418 64.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 4.7e-156 555.1 431 62.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.2e-156 554.7 434 65.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.2e-155 551.6 416 66.6
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 6.8e-155 551.2 451 61.9
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-154 550.4 319 80.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.5e-154 550.1 426 64.3
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.8e-154 548.1 457 61.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 9.8e-154 547.4 416 66.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.7e-153 546.6 420 65.2
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.7e-153 545.4 444 62.2
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 6.4e-153 544.7 428 63.8
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.4e-152 542.7 434 62.0
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.2e-152 542.3 382 68.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.2e-152 542.3 416 65.4
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 4.1e-152 542.0 376 70.2
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 3.5e-151 538.9 423 64.5
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.1e-148 529.6 329 76.3
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.6e-148 528.9 472 58.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.7e-148 528.5 461 59.7
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.1e-147 525.8 390 65.4
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.2e-146 523.9 392 65.3
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 7.6e-146 521.2 393 64.9
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.4e-145 517.7 419 61.1
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.0e-142 509.2 448 60.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 3.0e-142 509.2 414 63.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.1e-132 476.5 409 59.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.6e-132 475.7 336 66.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 6.2e-132 474.9 307 71.0
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 9.0e-131 471.1 307 72.6
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 7.6e-130 468.0 300 71.0
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 3.2e-128 462.6 310 71.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.3e-126 457.2 421 55.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.7e-126 454.5 330 66.1
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.3e-124 450.7 412 55.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.8e-124 449.5 335 64.8
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.2e-119 434.1 428 52.1
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.3e-117 426.0 422 50.0
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.6e-116 423.7 416 51.4
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.2e-116 421.8 434 51.8
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 3.1e-115 419.5 402 52.0
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.5e-104 382.1 310 60.3
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-97 361.3 291 60.1
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.3e-94 350.1 278 63.7
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.1e-94 349.0 316 54.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.6e-79 300.8 280 57.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.3e-75 285.8 183 66.7
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 9.4e-72 275.0 464 37.5
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 4.5e-66 256.1 229 53.3
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.3e-65 254.6 381 41.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.9e-57 226.9 421 36.3
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 7.3e-56 222.2 593 29.5
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 3.9e-49 199.9 245 48.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.8e-45 186.0 195 49.7
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.2e-44 184.1 129 69.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.0e-41 172.9 119 71.4
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.1e-40 171.8 135 61.5
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.4e-35 154.8 117 65.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.4e-30 138.3 141 52.5
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.0e-25 122.1 256 36.7
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.3e-25 121.7 122 57.4
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.6e-18 98.2 120 43.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 6.2e-15 86.3 105 47.6
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 9.0e-14 82.4 60 61.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.4e-08 62.8 72 51.4
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 9.0e-06 55.8 39 61.5


User provided reference genes

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