Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.5e-189 666.0 334 100.0
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.9e-132 475.7 306 79.1
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 3.8e-132 475.3 306 78.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.1e-130 469.5 306 78.4
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 5.7e-128 461.5 315 73.0
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.1e-126 455.3 307 75.6
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.0e-125 453.0 313 75.1
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 7.7e-125 451.1 313 74.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 9.4e-123 444.1 304 73.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 7.4e-120 434.5 271 76.8
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 4.5e-117 425.2 302 70.2
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.3e-116 423.7 304 69.4
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.9e-115 419.9 304 69.1
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 2.5e-115 419.5 304 68.8
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 4.2e-115 418.7 300 69.7
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 9.4e-115 417.5 304 69.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 3.6e-114 415.6 279 72.8
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 6.1e-114 414.8 300 68.7
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 6.1e-114 414.8 368 60.9
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 7.9e-114 414.5 352 60.8
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.4e-113 413.7 279 74.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.1e-112 410.6 260 76.2
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 3.7e-111 405.6 308 65.3
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 6.3e-111 404.8 279 71.7
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.4e-110 403.7 271 70.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.4e-110 402.9 330 63.6
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 3.1e-110 402.5 279 70.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 9.1e-110 401.0 279 71.7
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 7.7e-109 397.9 270 70.7
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.3e-108 397.1 279 68.8
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.2e-108 396.4 306 65.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.8e-108 395.6 305 65.9
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 5.0e-108 395.2 294 65.6
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 8.5e-108 394.4 294 67.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.9e-107 393.3 315 61.9
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.9e-107 393.3 325 62.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.5e-107 392.9 296 65.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 2.5e-107 392.9 284 65.5
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 7.2e-107 391.3 298 65.8
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.7e-106 389.4 277 67.9
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 4.7e-106 388.7 294 66.3
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 8.0e-106 387.9 280 69.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.0e-105 387.5 294 66.0
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.0e-105 387.5 266 71.1
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.8e-105 386.7 270 68.5
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.3e-105 386.3 266 71.1
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 4.0e-105 385.6 296 67.9
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.0e-105 385.6 318 61.9
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.0e-105 385.6 302 66.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-104 384.0 302 65.9
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.0e-104 383.3 302 64.6
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.0e-104 383.3 266 69.5
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.6e-104 382.9 258 71.3
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 3.3e-104 382.5 305 64.3
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 4.4e-104 382.1 338 58.0
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.7e-103 380.2 302 65.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 2.2e-103 379.8 307 62.5
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.8e-103 379.4 269 68.0
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 3.7e-103 379.0 269 67.3
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.7e-103 379.0 276 68.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 4.8e-103 378.6 298 64.4
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 4.8e-103 378.6 317 59.9
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 6.3e-103 378.3 305 63.0
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 8.2e-103 377.9 306 61.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.1e-102 377.5 259 70.3
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 2.4e-102 376.3 262 69.5
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 4.1e-102 375.6 292 65.1
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 9.1e-102 374.4 279 65.2
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 9.1e-102 374.4 308 60.7
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.6e-101 373.6 270 66.3
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.6e-101 373.6 274 63.9
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.5e-101 372.5 262 71.8
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 5.9e-101 371.7 260 66.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 5.9e-101 371.7 264 65.2
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 7.7e-101 371.3 273 66.3
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.0e-100 370.9 329 60.5
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.0e-100 370.9 294 63.6
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.3e-100 370.5 274 65.7
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 5.0e-100 368.6 321 60.7
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 6.5e-100 368.2 245 73.5
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.9e-99 366.7 264 68.6
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.5e-99 366.3 314 58.6
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 2.5e-99 366.3 237 70.5
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 7.2e-99 364.8 306 57.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 9.4e-99 364.4 243 73.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 8.0e-98 361.3 259 65.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.4e-97 360.5 265 63.0
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.4e-97 360.5 265 63.0
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 2.3e-97 359.8 265 62.6
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 3.0e-97 359.4 265 62.6
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 3.0e-97 359.4 301 58.8
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 4.0e-97 359.0 263 63.5
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.2e-96 357.5 340 56.5
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.5e-96 357.1 240 69.6
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.4e-96 355.9 210 79.5
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 3.4e-96 355.9 344 56.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.4e-96 355.9 260 65.4
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.2e-93 347.4 251 64.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.8e-92 342.4 249 67.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.9e-91 340.1 283 60.1
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.6e-90 337.0 335 52.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.8e-89 333.6 335 52.5
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 3.0e-89 332.8 312 59.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.0e-89 332.8 309 54.7
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.0e-89 332.8 212 74.5
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.3e-84 317.4 298 54.7
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 7.3e-83 311.6 292 59.6
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 5.7e-80 302.0 236 64.8
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.4e-78 297.4 190 71.6
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 5.9e-77 292.0 231 59.7
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.0e-73 281.2 306 47.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.2e-72 277.7 264 54.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.7e-69 266.5 210 58.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 3.3e-67 259.6 233 54.9
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 9.2e-62 241.5 229 51.5
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.4e-54 215.7 267 46.4
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.6e-53 214.2 160 65.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 7.8e-53 211.8 214 50.0
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 9.3e-46 188.3 119 74.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 3.9e-44 183.0 119 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.4e-40 169.9 160 52.5
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.5e-24 116.3 83 65.1
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 7.6e-24 115.5 72 81.9
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 4.3e-19 99.8 68 70.6
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.8e-18 96.3 61 73.8
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.8e-18 96.3 61 73.8
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.3e-18 95.9 161 39.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.7e-15 87.8 164 34.8
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.7e-15 87.8 78 61.5
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.7e-15 87.8 184 34.2
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.9e-14 84.3 131 38.2
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 5.5e-14 82.8 192 30.7
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.3e-14 82.0 189 31.2
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 9.3e-14 82.0 131 38.2
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.2e-13 81.6 189 30.2
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.6e-13 81.3 184 31.5
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.1e-13 80.9 131 37.4
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.7e-13 80.5 214 30.4
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 3.6e-13 80.1 131 38.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.6e-13 79.7 192 30.7
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.6e-13 79.7 207 31.9
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 7.9e-13 79.0 185 31.9
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.0e-12 78.6 183 32.2
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.0e-12 78.6 131 36.6
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.8e-12 77.8 184 30.4
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.3e-12 77.4 138 34.8
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 2.3e-12 77.4 138 34.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.3e-12 77.4 184 30.4
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 3.0e-12 77.0 183 32.2
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 3.0e-12 77.0 194 32.5
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.0e-12 77.0 214 28.0
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.9e-12 76.6 184 30.4
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.9e-12 76.6 215 29.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 3.9e-12 76.6 131 35.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 3.9e-12 76.6 131 35.1
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 5.1e-12 76.3 184 32.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 5.1e-12 76.3 131 35.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 5.1e-12 76.3 201 29.4
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 8.7e-12 75.5 194 32.0
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.5e-11 73.9 163 30.7
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.3e-11 73.6 131 34.4
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 7.4e-11 72.4 215 27.0
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 9.7e-11 72.0 198 29.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.6e-10 71.2 186 29.0
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.8e-10 70.5 185 29.2
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.1e-09 68.6 138 31.9
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.1e-09 68.6 123 31.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.4e-09 68.2 188 29.3
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.4e-09 68.2 126 33.3
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 3.1e-09 67.0 185 30.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 6.9e-09 65.9 266 26.3
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 2.0e-08 64.3 59 54.2
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 2.6e-08 63.9 171 31.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.6e-08 63.9 121 31.4
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.6e-08 63.9 274 24.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 4.5e-08 63.2 90 36.7
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.8e-07 60.1 230 24.8
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.1e-06 58.5 129 32.6
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 2.5e-06 57.4 96 34.4


User provided reference genes

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