Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 3417.5 1725 100.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2618.6 1738 77.2
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2551.9 1701 76.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2541.1 1733 75.2
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2527.3 1724 75.2
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2465.6 1793 71.9
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2465.6 1722 74.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2376.3 1435 80.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2369.7 1733 69.4
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2353.2 1750 69.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2343.2 1753 68.6
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2342.4 1732 68.6
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2340.8 1739 69.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2340.5 1745 69.3
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2329.3 1741 67.9
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2321.6 1760 67.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2317.3 1738 68.2
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2315.4 1732 68.1
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2312.7 1742 68.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2311.2 1739 67.2
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1733 67.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1752 67.1
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2298.5 1751 67.6
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2296.9 1732 67.7
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2293.8 1658 69.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2290.0 1738 67.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2283.8 1736 66.8
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2281.1 1628 70.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2280.4 1711 67.3
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2276.1 1681 68.3
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2271.1 1743 66.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2269.2 1754 66.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2261.1 1290 84.3
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2258.4 1734 66.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2252.6 1743 66.0
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1302 82.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2243.8 1752 65.9
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2234.5 1758 65.4
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2230.3 1732 66.4
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1748 65.6
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1707 66.8
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1730 66.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2228.0 1743 65.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2227.6 1750 65.3
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2204.1 1737 65.1
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1749 64.0
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2156.7 1748 62.7
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2154.4 1803 63.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2152.5 1713 64.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2152.1 1740 63.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2147.5 1747 63.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2146.7 1728 64.1
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2146.7 1713 64.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2141.3 1747 62.1
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1796 63.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2128.2 1717 63.1
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2124.7 1743 62.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2123.2 1733 63.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2117.4 1718 63.6
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2111.6 1715 63.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2111.3 1889 59.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1737 62.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1750 62.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2103.9 1747 62.6
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2103.6 1752 62.2
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2101.6 1742 62.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2099.7 1745 62.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2092.8 1750 62.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2092.0 1746 62.1
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2090.5 1693 63.0
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2088.9 1742 61.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2086.2 1802 59.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2082.4 1756 61.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2077.0 1743 62.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2076.6 1736 61.6
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2038.1 1721 61.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2031.1 1745 60.2
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2014.2 1752 60.1
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2012.3 1692 61.1
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1986.5 1756 59.1
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1979.1 1636 62.2
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1978.8 1714 60.1
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1946.4 2159 51.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1921.7 1720 58.6
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1909.8 1749 58.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1881.7 1738 56.2
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1864.0 1656 58.0
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1850.9 1483 62.9
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1848.2 1159 76.9
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1815.0 1043 84.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1813.5 1666 57.6
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1802.3 1820 54.3
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1680.6 1721 52.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1661.7 1648 51.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1636.3 1744 53.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1625.1 1472 58.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1617.1 1730 48.9
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1616.3 1720 51.3
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1580.5 1685 50.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1526.9 1128 72.6
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1457.6 936 73.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1444.5 1084 63.7
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1366.7 1165 62.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1295.4 1373 51.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1275.0 1182 58.8
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1099.0 910 60.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.1e-310 1069.3 956 61.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 4.0e-294 1015.8 600 80.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 7.4e-288 995.0 742 65.2
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.1e-279 966.8 616 75.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.2e-259 899.4 683 61.5
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.2e-243 846.3 551 73.9
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.0e-228 798.5 817 54.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 4.1e-214 750.0 1608 34.5
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.0e-209 733.4 871 42.8
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.2e-182 643.7 617 62.2
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.6e-178 631.7 430 70.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.3e-151 542.3 376 70.2
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 9.3e-150 536.2 329 77.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 5.9e-136 490.3 902 35.5
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 7.7e-112 410.2 653 44.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.7e-111 409.1 697 36.6
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 3.7e-106 391.3 448 61.2
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-105 389.4 240 77.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.4e-105 388.7 428 44.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.0e-104 385.6 365 57.5
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.9e-102 379.0 246 72.0
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.6e-91 342.0 537 43.8
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.4e-89 335.5 214 69.6
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.7e-80 305.4 202 75.2
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.1e-77 295.8 175 75.4
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-72 279.3 183 68.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 8.7e-71 273.9 471 46.1
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 6.4e-58 231.1 153 70.6
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.5e-49 201.4 207 45.9
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.2e-43 183.7 115 75.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.7e-42 179.9 129 62.0
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 3.0e-39 169.1 99 82.8
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.0e-35 156.4 168 49.4
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 5.0e-34 151.8 128 52.3
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.8e-29 135.2 92 73.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.8e-28 133.3 187 43.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.4e-27 129.0 123 52.0
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.4e-25 123.6 73 78.1
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 3.2e-25 122.5 73 80.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.2e-25 122.1 88 65.9
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.5e-25 121.7 112 60.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 9.4e-25 120.9 77 74.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.0e-23 117.5 221 44.3
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.8e-23 116.7 103 56.3
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.3e-21 110.5 205 36.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 3.7e-21 109.0 75 76.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 4.2e-17 95.5 57 80.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.1e-14 87.4 164 48.2
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.5e-14 87.0 94 52.1
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.6e-14 86.3 98 46.9
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.3e-14 85.9 51 74.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.8e-12 80.1 57 63.2
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.8e-12 80.1 50 78.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 4.1e-12 79.0 64 59.4
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.6e-11 77.0 52 71.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.5e-11 75.9 41 78.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.0e-10 72.0 92 43.5
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.5e-09 68.6 271 35.4
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 5.5e-09 68.6 73 54.8
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.2e-08 67.4 49 69.4
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 6.1e-08 65.1 46 71.7
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.8e-07 63.5 56 55.4
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 3.0e-07 62.8 166 29.5
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 5.7e-06 58.5 54 53.7
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 9.7e-06 57.8 44 59.1
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 9.7e-06 57.8 117 43.6


User provided reference genes

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