Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 0.0e+00 1226.1 650 100.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.3e-257 891.7 682 74.2
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 3.0e-181 639.4 697 56.5
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 7.3e-180 634.8 665 57.7
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 6.0e-174 615.1 688 55.1
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.9e-170 601.3 682 55.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.4e-169 599.4 670 56.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 4.4e-169 599.0 667 55.2
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.4e-161 572.8 684 52.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 5.8e-161 572.0 815 46.9
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.9e-160 568.9 746 49.7
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.3e-133 480.3 549 55.6
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.9e-127 460.7 680 47.8
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.7e-121 438.7 664 44.4
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.8e-117 427.6 665 44.8
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.3e-115 421.4 674 45.4
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 4.8e-115 419.5 665 44.2
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.1e-114 416.8 673 42.9
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.3e-114 416.0 672 43.5
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.2e-111 405.6 685 42.9
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 7.2e-111 405.6 671 44.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 7.4e-108 395.6 658 43.8
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.3e-107 394.8 673 41.8
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.7e-107 394.4 667 42.3
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.2e-107 394.0 682 41.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.2e-107 392.1 713 41.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 7.7e-105 385.6 700 40.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.4e-103 378.6 711 40.5
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.1e-102 375.9 693 41.7
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 3.3e-100 370.2 725 39.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 8.2e-99 365.5 704 38.9
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.4e-98 364.8 683 41.1
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.6e-97 360.5 694 37.8
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.9e-96 357.1 658 41.9
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 8.5e-96 355.5 716 38.7
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.5e-95 354.0 683 39.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.2e-95 353.6 599 42.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.5e-95 352.8 678 41.4
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.6e-94 351.3 675 39.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.2e-93 346.3 704 38.6
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 6.8e-93 345.9 674 38.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.8e-93 345.9 701 38.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-92 345.1 711 38.1
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 2.8e-91 340.5 742 39.8
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 3.7e-91 340.1 692 40.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.7e-91 340.1 697 38.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 3.7e-91 340.1 670 37.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.3e-91 339.3 704 37.9
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 6.3e-91 339.3 677 39.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 8.3e-91 339.0 705 38.4
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.6e-89 334.7 666 39.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.5e-89 333.6 709 37.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.9e-89 332.8 699 36.8
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.0e-88 332.0 647 38.3
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 5.0e-88 329.7 669 38.3
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.5e-87 328.2 720 36.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 9.4e-87 325.5 712 36.0
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.1e-86 324.3 667 36.0
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.4e-85 321.6 662 37.9
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.0e-85 320.1 660 37.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.2e-85 319.7 673 38.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.8e-85 319.3 656 39.5
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 8.8e-85 318.9 709 35.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-83 315.1 671 37.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.7e-83 314.7 677 36.8
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.7e-83 313.5 716 36.2
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 6.3e-83 312.8 665 38.9
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.4e-82 311.6 661 37.7
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.4e-82 311.6 663 37.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.1e-82 310.5 701 37.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.6e-81 308.1 678 37.8
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.0e-81 307.8 665 38.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.7e-81 307.4 669 39.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.8e-80 303.5 673 37.6
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.1e-79 302.0 668 37.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.2e-79 300.1 674 35.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.6e-78 297.0 662 35.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.4e-77 295.0 664 38.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-77 294.7 723 34.6
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.3e-77 294.3 743 35.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.2e-77 293.1 663 35.4
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.7e-75 287.0 664 37.5
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.7e-75 287.0 680 36.6
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 6.3e-75 286.2 729 35.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 6.3e-75 286.2 759 32.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 8.3e-75 285.8 672 37.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 5.4e-74 283.1 694 37.8
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 9.2e-74 282.3 792 32.2
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-73 282.0 725 34.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.9e-71 274.6 455 42.6
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.5e-71 274.2 822 30.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.8e-70 270.8 696 32.9
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-70 270.4 812 32.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.8e-69 268.1 700 34.1
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 3.1e-69 267.3 727 32.7
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 4.0e-69 266.9 543 39.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.8e-69 266.2 659 33.4
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.3e-67 261.9 860 28.4
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 7.0e-66 256.1 864 28.5
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.6e-65 255.0 672 33.5
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 7.8e-65 252.7 756 31.0
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.7e-64 251.5 763 31.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.9e-63 248.1 706 32.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.8e-62 244.2 853 28.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.8e-61 241.5 606 33.3
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.8e-60 236.5 641 34.2
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.7e-59 233.8 636 33.2
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.2e-58 230.7 555 33.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 9.2e-58 229.2 639 33.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 7.8e-57 226.1 611 32.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 8.6e-56 222.6 699 31.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.5e-55 221.1 638 31.0
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.2e-52 212.2 666 29.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 9.9e-52 209.1 710 30.8
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.4e-51 206.5 637 30.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.4e-50 205.3 913 25.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 7.1e-50 203.0 636 30.5
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.6e-48 196.4 843 26.5
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.8e-45 186.4 589 31.2
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.6e-44 184.5 621 31.4
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.9e-43 181.0 590 33.2
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.0e-40 171.0 662 27.3
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.8e-38 163.7 339 35.4
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 7.6e-36 156.4 439 32.1
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.7e-35 155.2 701 26.0
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 7.1e-34 149.8 218 39.0
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 1.5e-31 142.1 243 40.3
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.8e-30 137.9 156 47.4
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.6e-30 137.5 564 27.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.2e-25 122.5 311 34.7
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.5e-25 120.9 165 41.8
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.9e-23 115.2 318 33.3
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 4.3e-23 114.0 362 31.8
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.4e-23 113.2 175 44.6
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.6e-22 112.1 306 35.0
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.7e-22 110.9 420 28.6
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.8e-22 110.5 306 34.0
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.4e-21 108.2 311 32.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.4e-20 104.4 93 49.5
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 7.6e-20 103.2 343 35.9
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.0e-19 102.8 343 35.9
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.2e-19 101.7 478 27.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.9e-19 100.5 678 25.1
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 8.4e-19 99.8 344 30.2
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.4e-19 99.8 82 53.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.1e-18 99.4 328 31.7
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 5.5e-18 97.1 358 29.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.5e-18 97.1 170 42.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 3.9e-16 90.9 183 37.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 5.1e-16 90.5 378 29.6
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.7e-16 89.7 173 38.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.1e-15 89.4 85 50.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.8e-14 84.7 119 40.3
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.9e-13 80.1 119 39.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.6e-12 78.2 530 25.1
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.7e-11 75.5 329 31.6
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.4e-11 73.2 520 24.8
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.4e-10 72.4 114 35.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.2e-10 71.2 61 55.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.8e-08 65.5 82 37.8
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.0e-08 64.7 109 41.3
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 8.7e-08 63.2 80 45.0
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.3e-07 61.2 57 49.1
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 9.7e-07 59.7 100 37.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.6e-06 58.9 105 39.0


User provided reference genes

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