Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1597.0 798 100.0
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1265.0 803 78.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1253.0 800 77.8
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1225.3 804 76.2
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 0.0e+00 1212.6 803 74.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 0.0e+00 1211.8 805 76.1
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 0.0e+00 1201.8 804 74.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 0.0e+00 1193.7 803 73.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1172.1 803 73.6
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1155.2 809 73.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1154.8 808 73.8
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 0.0e+00 1151.7 803 71.6
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1084.3 813 66.9
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1075.1 813 66.7
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1075.1 812 68.2
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 3.0e-308 1061.6 821 66.5
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 9.8e-304 1046.6 814 65.8
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.1e-302 1043.1 812 64.9
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 5.4e-302 1040.8 814 65.2
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 7.1e-302 1040.4 822 65.1
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.7e-301 1038.5 814 65.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 3.5e-301 1038.1 814 64.6
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.8e-301 1036.9 814 64.9
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 7.8e-301 1036.9 810 64.6
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.7e-300 1035.8 816 65.0
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.9e-299 1032.3 814 64.7
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.9e-299 1032.3 819 63.7
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 6.2e-298 1027.3 809 64.5
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.4e-297 1026.2 816 63.1
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.3e-297 1025.4 813 64.1
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 3.4e-296 1021.5 819 64.0
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.6e-296 1020.4 808 64.1
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 784 66.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 4.9e-295 1017.7 809 64.2
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 9.2e-294 1013.4 817 63.4
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.8e-293 1010.4 809 63.9
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.9e-291 1005.7 817 62.9
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-288 996.5 818 62.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-288 996.5 818 62.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.2e-288 996.5 810 63.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.5e-288 996.1 876 59.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 5.8e-288 994.2 814 62.0
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 8.4e-287 990.3 814 60.4
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-286 989.9 821 61.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.6e-285 986.1 872 59.6
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 2.3e-284 982.2 813 61.4
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.5e-283 979.5 813 60.8
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 3.6e-282 974.9 813 60.5
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.8e-280 967.6 815 61.3
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 4.9e-279 964.5 811 60.7
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 7.9e-277 957.2 813 60.8
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.0e-276 955.3 836 60.6
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 8.7e-276 953.7 808 60.0
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.4e-273 946.4 808 59.7
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 9.0e-273 943.7 812 58.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.8e-271 938.3 818 58.7
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 6.4e-271 937.6 810 58.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.9e-270 936.0 819 58.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 9.3e-270 933.7 818 58.3
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 2.1e-269 932.6 807 58.1
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.5e-269 931.8 853 57.2
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 6.0e-269 931.0 820 58.4
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.9e-269 930.6 819 58.4
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.9e-267 926.0 814 58.1
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-267 925.2 817 58.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 4.3e-267 924.9 814 57.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 9.6e-267 923.7 817 58.3
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 9.6e-267 923.7 824 58.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.6e-266 922.9 819 57.9
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.1e-266 922.5 817 58.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 3.7e-266 921.8 817 58.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 8.2e-266 920.6 825 57.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 4.0e-265 918.3 819 58.2
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.0e-265 918.3 813 57.7
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.2e-264 916.8 808 57.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 7.6e-264 914.1 837 58.4
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 7.6e-264 914.1 810 57.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.0e-263 913.7 815 57.7
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.7e-263 912.9 812 57.6
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.5e-262 907.9 819 57.6
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.9e-259 899.4 812 58.7
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.1e-257 892.1 823 56.7
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 5.9e-256 887.9 812 57.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.2e-254 882.1 822 55.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.3e-242 843.6 808 53.7
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.7e-242 843.2 816 54.4
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 4.5e-240 835.1 807 53.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.7e-239 833.2 813 54.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.7e-234 816.6 807 53.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.1e-233 812.4 805 52.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.3e-231 807.0 806 51.4
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.8e-231 805.4 827 52.2
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 8.5e-231 804.3 815 51.7
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.5e-224 782.3 584 69.0
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.8e-223 778.9 813 51.0
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.2e-221 773.9 746 55.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.5e-219 764.6 624 59.6
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.1e-209 732.6 808 47.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 7.5e-203 711.4 891 46.9
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.7e-192 676.4 537 62.6
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.1e-183 645.6 818 42.7
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.5e-182 643.3 810 45.7
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.7e-181 639.0 811 45.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.2e-173 612.1 843 43.5
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 6.6e-167 592.0 812 43.6
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 2.9e-154 550.1 462 59.1
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 6.4e-154 548.9 843 38.7
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 6.2e-149 532.3 800 41.4
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 6.9e-148 528.9 582 50.5
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.3e-141 508.1 674 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 5.3e-140 502.7 822 37.6
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.9e-140 502.3 478 55.6
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.7e-138 497.7 848 38.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 6.3e-133 479.2 809 40.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.0e-127 461.8 812 38.3
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.0e-127 461.8 837 34.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.6e-115 421.4 337 62.9
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.8e-95 354.8 682 31.7
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 9.8e-94 349.0 396 49.0
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.1e-80 304.7 399 44.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.9e-68 265.0 740 29.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 9.2e-68 262.7 273 52.4
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.2e-67 262.3 274 52.6
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.3e-66 258.1 274 51.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.9e-57 228.4 157 72.6
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.8e-55 221.9 208 57.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 2.1e-51 208.4 203 55.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 6.0e-43 180.3 842 23.4
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 9.0e-39 166.4 136 58.8
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.2e-36 157.5 149 56.4
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.8e-34 152.1 132 56.1
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 2.8e-32 144.8 455 28.4
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.3e-29 136.0 127 55.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 3.1e-23 114.8 92 64.1
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 5.7e-17 94.0 62 74.2
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 4.8e-16 90.9 109 46.8
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.8e-15 89.0 60 68.3
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 4.1e-15 87.8 109 45.9
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.0e-14 85.5 70 54.3
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 5.0e-13 80.9 62 64.5
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.5e-13 80.1 130 35.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.1e-12 79.7 46 73.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.9e-12 79.0 46 73.9
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 4.2e-12 77.8 44 84.1
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 8.8e-10 70.1 115 40.0
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 2.0e-06 58.9 37 75.7
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 2.0e-06 58.9 37 75.7
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 2.0e-06 58.9 37 75.7


User provided reference genes

Program Settings