Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 0.0e+00 1158.3 592 100.0
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 2.3e-297 1025.0 582 88.8
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 2.4e-294 1015.0 579 89.6
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 4.4e-293 1010.7 582 89.0
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 7.8e-290 1000.0 579 87.9
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 1.3e-289 999.2 567 85.9
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 6.6e-289 996.9 579 88.3
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 5.6e-288 993.8 580 84.5
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 1.5e-277 959.1 594 79.0
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 7.6e-277 956.8 581 80.0
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 8.4e-276 953.4 584 83.4
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 4.6e-274 947.6 588 78.4
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.3e-273 945.3 570 80.7
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 8.7e-273 943.3 542 88.0
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 3.3e-272 941.4 573 79.9
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 4.3e-272 941.0 582 79.0
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 9.6e-272 939.9 586 78.2
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 2.8e-271 938.3 590 78.0
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 2.8e-271 938.3 612 75.5
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 1.8e-270 935.6 581 78.3
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 2.4e-270 935.3 582 79.4
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 5.3e-270 934.1 582 82.1
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 1.2e-269 932.9 573 79.8
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 2.0e-269 932.2 595 77.5
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 2.0e-269 932.2 595 77.5
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 2.6e-269 931.8 571 79.2
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 1.7e-268 929.1 569 82.8
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 2.2e-268 928.7 569 83.8
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 1.9e-267 925.6 568 78.5
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 5.5e-267 924.1 569 77.2
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 9.3e-267 923.3 571 77.4
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 9.3e-267 923.3 590 77.5
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 1.2e-266 922.9 586 77.5
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 1.2e-266 922.9 571 77.2
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 7.9e-266 920.2 581 78.0
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.8e-265 919.1 569 78.2
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 5.1e-265 917.5 567 78.5
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 8.7e-265 916.8 569 80.0
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 8.7e-265 916.8 571 76.9
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.1e-264 916.4 617 73.6
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.3e-264 914.8 605 75.9
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 7.4e-264 913.7 566 77.6
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 4.8e-263 911.0 583 76.3
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 4.8e-263 911.0 581 75.9
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 6.3e-263 910.6 583 76.3
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 8.2e-263 910.2 568 78.5
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 8.2e-263 910.2 583 76.3
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 8.2e-263 910.2 581 75.9
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 1.1e-262 909.8 583 76.2
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 5.3e-262 907.5 569 76.4
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 6.9e-262 907.1 569 76.6
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 9.0e-262 906.7 569 76.4
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 2.6e-261 905.2 569 76.3
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 5.0e-260 901.0 568 76.4
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 1.1e-259 899.8 569 76.3
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 2.5e-259 898.7 647 71.6
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 9.4e-259 896.7 600 75.7
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 9.4e-259 896.7 585 74.9
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 6.1e-258 894.0 591 74.3
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 3.9e-257 891.3 572 76.6
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 7.4e-256 887.1 583 74.4
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.7e-255 885.9 566 75.8
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 8.2e-255 883.6 687 67.2
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 5.3e-254 880.9 578 73.7
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 6.9e-254 880.6 574 74.7
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 5.9e-253 877.5 591 72.3
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.7e-252 875.9 594 73.2
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 1.1e-251 873.2 578 75.1
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 1.4e-251 872.8 608 72.7
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 5.5e-251 870.9 595 71.6
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 5.5e-251 870.9 550 77.5
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 3.6e-250 868.2 588 72.4
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.4e-249 866.3 533 78.6
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 3.0e-249 865.1 598 72.6
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 1.3e-247 859.8 593 71.7
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 1.1e-246 856.7 485 89.3
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.1e-246 854.7 571 74.4
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.0e-244 850.1 590 73.4
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.3e-244 849.7 679 63.9
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 2.2e-244 849.0 593 72.5
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 2.5e-243 845.5 531 79.3
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 4.2e-243 844.7 589 71.3
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 9.4e-243 843.6 587 72.4
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.2e-242 843.2 598 69.7
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 8.0e-234 813.9 472 86.0
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 8.8e-233 810.4 497 79.9
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 9.7e-232 807.0 588 64.8
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 1.0e-228 797.0 623 65.7
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 4.7e-226 788.1 487 78.0
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 8.3e-223 777.3 594 64.1
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 3.0e-217 758.8 462 79.4
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 1.3e-212 743.4 462 75.8
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 3.1e-193 679.1 474 70.7
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 3.9e-188 662.1 440 74.8
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 5.2e-185 651.7 465 69.9
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.0e-177 625.5 600 59.0
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.3e-175 620.5 610 56.1
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 3.8e-175 619.0 399 73.9
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 1.1e-174 617.5 531 56.3
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.5e-152 543.9 579 52.7
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 3.9e-148 529.3 459 57.5
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 1.3e-143 514.2 397 66.2
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 1.7e-143 513.8 351 70.9
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.5e-128 464.2 288 78.5
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 5.2e-124 449.1 310 67.4
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.2e-120 438.0 232 87.1
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 2.6e-115 420.2 562 41.6
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.4e-107 393.3 265 72.8
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 1.6e-104 384.4 243 75.3
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.0e-103 381.7 240 77.9
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 5.0e-87 326.2 605 33.9
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.5e-67 261.5 208 64.4
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.6e-64 250.0 173 69.4
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 1.3e-63 248.4 143 83.9
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 7.9e-56 222.6 150 77.3
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 2.9e-50 204.1 125 79.2
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 3.8e-50 203.8 134 71.6
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.1e-41 175.6 557 27.3
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.1e-41 172.9 87 86.2
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.5e-40 170.6 189 54.0
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 8.7e-39 166.0 88 85.2
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 1.4e-36 158.7 560 25.5
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.9e-33 148.3 104 67.3
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 6.7e-31 139.8 534 28.3
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 4.2e-25 120.6 64 81.2
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 1.2e-24 119.0 91 67.0
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 5.7e-22 110.2 69 78.3
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 1.4e-17 95.5 53 77.4
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 1.4e-17 95.5 59 79.7
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 1.4e-15 89.0 50 88.0
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 5.1e-15 87.0 55 81.8
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 1.5e-14 85.5 558 21.1
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 7.4e-14 83.2 56 80.4
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 3.1e-12 77.8 82 52.4
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 1.0e-10 72.8 82 51.2
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 1.7e-10 72.0 41 85.4
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 8.0e-08 63.2 41 68.3
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 6.7e-07 60.1 536 21.3
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 6.7e-07 60.1 42 69.0
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 2.0e-06 58.5 561 20.3
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 2.6e-06 58.2 568 20.4
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 2.6e-06 58.2 579 20.0


User provided reference genes

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