Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.6e-177 625.9 317 100.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 9.2e-104 380.9 343 63.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.2e-97 359.8 329 61.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.9e-97 359.4 332 63.6
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 5.6e-93 345.1 338 59.2
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 9.6e-93 344.4 338 59.2
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 5.8e-90 335.1 327 59.3
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-87 327.0 313 59.7
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-87 326.6 329 56.8
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.5e-87 325.9 327 54.7
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 4.6e-87 325.5 337 57.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.1e-83 314.3 336 56.2
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 9.0e-83 311.2 318 58.2
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.6e-82 309.7 340 52.4
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 4.5e-82 308.9 331 54.1
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 7.6e-82 308.1 279 58.8
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.7e-81 307.0 325 55.1
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.9e-81 306.2 321 56.4
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 6.4e-81 305.1 290 59.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 8.4e-81 304.7 316 56.0
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.4e-80 303.9 332 53.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.4e-80 303.1 318 55.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 4.2e-80 302.4 342 52.3
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 7.1e-80 301.6 310 54.8
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.8e-78 297.0 334 53.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.8e-78 297.0 307 54.1
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 3.9e-78 295.8 318 55.3
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.9e-78 295.8 310 54.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.5e-77 293.9 232 63.8
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-77 293.1 267 58.4
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.6e-77 292.0 313 54.6
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 7.4e-77 291.6 329 51.1
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.3e-76 290.8 236 64.8
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.6e-76 290.4 307 53.1
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.8e-76 288.9 307 54.1
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.8e-76 288.9 285 57.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 8.1e-76 288.1 299 55.2
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.4e-75 287.3 338 53.0
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.4e-75 286.6 300 54.7
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 5.3e-75 285.4 361 48.8
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 9.0e-75 284.6 310 53.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-74 284.3 232 63.4
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-74 284.3 232 62.9
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-74 284.3 232 63.4
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.2e-74 284.3 232 62.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.2e-74 284.3 322 53.7
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 5.8e-74 282.0 232 62.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.0e-73 281.2 327 52.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 8.4e-73 278.1 308 52.3
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.1e-72 277.7 341 51.6
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.1e-72 277.7 330 48.2
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.4e-72 277.3 301 55.1
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.4e-72 277.3 332 49.7
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.9e-72 276.9 231 60.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 3.2e-72 276.2 211 67.8
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 9.3e-72 274.6 291 52.2
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.1e-71 273.5 328 51.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 6.0e-71 271.9 291 53.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 6.0e-71 271.9 303 52.8
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 5.1e-70 268.9 232 60.3
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.7e-70 268.5 283 52.3
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 6.7e-70 268.5 331 49.2
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 7.4e-69 265.0 232 61.2
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 4.8e-68 262.3 307 51.8
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.3e-67 258.8 285 51.9
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.3e-65 254.2 261 53.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.9e-65 253.1 277 51.6
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 5.0e-65 252.3 340 47.1
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.5e-65 251.9 335 48.7
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 8.5e-65 251.5 302 51.7
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.5e-64 250.0 266 53.0
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 7.2e-64 248.4 209 62.7
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.6e-63 247.3 209 58.9
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-62 244.6 301 48.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.3e-62 243.4 313 49.5
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.0e-62 243.0 319 48.9
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 3.0e-62 243.0 301 47.8
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 6.7e-62 241.9 322 46.6
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.7e-62 241.9 321 45.5
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-61 240.7 295 47.1
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-60 237.7 258 51.6
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.8e-60 236.5 240 54.6
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 6.3e-60 235.3 348 42.2
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.1e-59 233.0 266 48.9
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.5e-58 230.7 239 56.5
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.5e-58 230.7 211 60.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 7.7e-58 228.4 254 54.3
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.2e-55 221.1 202 59.9
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 6.1e-55 218.8 219 53.9
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.8e-54 217.2 227 48.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 8.8e-54 214.9 265 46.0
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.1e-53 214.5 201 53.2
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.6e-53 213.4 229 48.5
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.2e-52 208.4 207 58.0
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-51 208.0 350 40.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.4e-50 203.0 198 55.6
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 5.9e-50 202.2 192 56.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 7.7e-50 201.8 192 56.2
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-49 201.1 208 55.3
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.7e-47 193.4 308 41.9
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-43 179.9 253 42.7
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.2e-42 177.9 189 51.9
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.6e-42 176.8 158 57.0
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.5e-42 176.0 267 42.3
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 5.9e-42 175.6 197 46.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.3e-41 174.5 270 41.1
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 2.2e-41 173.7 170 58.8
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 8.5e-41 171.8 225 45.3
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.2e-40 169.9 222 43.7
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.2e-40 169.9 130 66.2
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.4e-38 164.5 327 41.3
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 8.8e-38 161.8 329 37.7
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 3.3e-37 159.8 326 37.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.3e-36 157.9 296 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.7e-36 156.4 191 43.5
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.8e-36 156.0 279 38.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.1e-35 154.8 199 45.2
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.5e-34 149.8 217 41.5
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 4.5e-34 149.4 126 63.5
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 5.9e-34 149.1 227 41.0
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 7.7e-34 148.7 133 59.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 8.5e-33 145.2 217 41.0
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.2e-32 142.9 322 34.5
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 8.0e-31 138.7 149 48.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 5.2e-30 136.0 210 37.1
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.0e-29 134.0 183 45.9
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 5.7e-29 132.5 208 39.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-28 131.0 202 38.6
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-28 129.8 106 66.0
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.3e-28 128.6 94 66.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.4e-27 127.1 219 37.4
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.4e-27 127.1 110 61.8
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.9e-26 122.5 222 37.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 5.9e-26 122.5 173 39.9
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.3e-25 121.3 101 66.3
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.9e-25 120.2 139 43.9
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 6.5e-25 119.0 314 33.4
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 9.5e-24 115.2 76 75.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-21 107.8 74 68.9
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.6e-21 107.1 150 44.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 2.2e-20 104.0 70 72.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.5e-16 90.5 172 39.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-15 87.8 97 39.2
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.1e-15 87.4 82 61.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.9e-12 77.0 80 56.2
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.1e-08 65.1 78 42.3
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.6e-07 60.1 44 63.6
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-06 58.5 41 68.3


User provided reference genes

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