Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr06g0166291 Lupinus albus HOM05D000445 ORTHO05D000314 2.1e-24 114.8 55 100.0
Lalb_Chr13g0292661 Lupinus albus HOM05D000445 ORTHO05D000314 4.0e-23 110.5 52 100.0
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 1.5e-22 108.6 52 98.1
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 1.5e-22 108.6 52 98.1
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 1.5e-22 108.6 52 98.1
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 3.4e-22 107.5 52 96.2
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.4e-22 107.5 52 96.2
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 3.4e-22 107.5 52 96.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 4.9e-21 103.6 52 92.3
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 4.9e-21 103.6 52 92.3
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 4.9e-21 103.6 52 92.3
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 6.5e-21 103.2 52 92.3
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 8.4e-21 102.8 52 92.3
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.4e-21 102.8 52 92.3
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 92.3
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 92.3
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 92.3
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 88.5
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 88.5
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 92.3
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 1.1e-20 102.4 52 92.3
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
C06p23170 Brassica napus HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
BolSC47t61071H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
BolSC49t61212H Brassica oleracea HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.9e-20 101.7 52 92.3
Sed0004640 Sechium edule HOM05D000445 ORTHO05D000314 3.2e-20 100.9 52 90.4
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 3.2e-20 100.9 52 90.4
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 3.2e-20 100.9 52 90.4
Gohir.D02G117422 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.2e-20 100.5 51 92.2
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 7.1e-20 99.8 52 90.4
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 1.2e-19 99.0 52 90.4
CAN.G547.16 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
CAN.G745.36 Capsicum annuum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
Peaxi162Scf00058g00822 Petunia axillaris HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
Peaxi162Scf00163g00089 Petunia axillaris HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.2e-19 99.0 52 90.4
Solyc00g500239.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-19 98.6 52 88.5
Solyc00g500304.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-19 98.6 52 88.5
Solyc11g063577.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-19 98.6 52 88.5
BolSC29t60492H Brassica oleracea HOM05D000445 ORTHO05D000314 2.1e-19 98.2 50 92.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 2.1e-19 98.2 52 88.5
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.7e-19 97.8 52 88.5
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.7e-19 97.8 52 88.5
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.7e-19 97.8 52 88.5
CAN.G1875.2 Capsicum annuum HOM05D000445 ORTHO05D000314 7.9e-19 96.3 52 88.5
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 7.9e-19 96.3 51 88.2
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 1.0e-18 95.9 52 88.5
Nitab4.5_0011099g0040 Nicotiana tabacum HOM05D000445 ORTHO05D036881 1.8e-18 95.1 52 86.5
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.8e-18 95.1 52 86.5
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.8e-18 95.1 52 86.5
RcHm_v2.0_Chr2g0102151 Rosa chinensis HOM05D000445 ORTHO05D000314 1.8e-18 95.1 51 84.3
Solyc08g029410.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.8e-18 95.1 52 86.5
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.0e-18 94.4 53 88.7
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.9e-18 94.0 54 87.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.9e-18 94.0 54 87.0
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.9e-18 94.0 54 87.0
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.9e-18 94.0 54 87.0
Nitab4.5_0004920g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.1e-18 93.6 52 84.6
Peaxi162Scf00603g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 5.1e-18 93.6 52 86.5
DCAR_031999 Daucus carota HOM05D000445 ORTHO05D000314 8.7e-18 92.8 52 84.6
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 8.7e-18 92.8 52 84.6
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 8.7e-18 92.8 52 84.6
FAN08G2610 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.1e-17 92.4 51 82.4
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 1.5e-17 92.0 52 86.5
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 1.5e-17 92.0 52 86.5
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.5e-17 92.0 52 86.5
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 1.9e-17 91.7 53 86.8
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 1.9e-17 91.7 52 84.6
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 3.3e-17 90.9 53 86.8
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.3e-17 90.5 52 82.7
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g028580 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 78.8
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0434g0574671 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0533g0575541 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0572g0575981 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-17 90.1 52 80.8
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Lsat_1_v5_gn_4_147941 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 89.7 52 80.8
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.6e-17 89.4 52 82.7
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 1.6e-16 88.6 44 93.2
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.1e-16 88.2 51 84.3
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.1e-16 88.2 51 84.3
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 8.2e-16 86.3 52 76.9
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 8.2e-16 86.3 52 76.9
Nitab4.5_0010831g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-15 85.5 49 87.8
Solyc11g062050.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.5 44 88.6
Ah.08g222970 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.4e-15 84.7 52 73.1
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.4e-15 84.7 43 90.7
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 9.0e-15 82.8 44 86.4
Nitab4.5_0000779g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-14 82.4 50 80.0
Phvul.007G139100 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 1.3e-13 79.0 51 74.5
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.7e-13 78.6 50 74.0
EL10As15g24112 Beta vulgaris HOM05D000445 ORTHO05D000314 2.2e-13 78.2 52 69.2
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 2.2e-13 78.2 52 69.2
AUR62041554 Chenopodium quinoa HOM05D000445 ORTHO05D000314 3.8e-13 77.4 45 77.8
EL10As12g24038 Beta vulgaris HOM05D000445 ORTHO05D000314 5.0e-13 77.0 52 67.3
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 6.5e-13 76.6 58 74.1
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 6.5e-13 76.6 47 72.3
HanXRQChr00c0593g0576451 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-12 75.5 46 76.1
MELO3C027250.2 Cucumis melo HOM05D000445 ORTHO05D000314 1.9e-12 75.1 52 73.1
arahy.Tifrunner.gnm1.ann1.9T9XDL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.2e-12 74.3 36 94.4
Solyc04g039780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-11 72.0 51 70.6
HanXRQChr13g0413621 Helianthus annuus HOM05D000445 ORTHO05D000314 7.9e-11 69.7 53 66.0
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.0e-10 69.3 33 93.9
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.3e-10 68.2 43 74.4
Aqoxy3G01863 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 2.3e-10 68.2 43 74.4
AL9U12050 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 6.7e-10 66.6 34 91.2
Migut.D01375 Erythranthe guttata HOM05D000445 ORTHO05D000314 6.7e-10 66.6 34 91.2
Gohir.D12G199050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.3e-09 63.9 52 65.4
Gorai.008G214200 Gossypium raimondii HOM05D000445 ORTHO05D000314 4.3e-09 63.9 52 65.4
BraSC143t45644Z Brassica rapa HOM05D000445 ORTHO05D000314 5.7e-09 63.5 32 90.6
Oeu048725.1 Olea europaea HOM05D000445 ORTHO05D000314 9.7e-09 62.8 40 75.0
Potri.019G028400 Populus trichocarpa HOM05D000445 ORTHO05D000314 9.7e-09 62.8 52 63.5
Gorai.009G345600 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.3e-08 62.4 34 79.4
Nitab4.5_0004929g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.3e-08 62.4 40 75.0
Gohir.D05G322050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.8e-08 61.2 34 79.4
Solyc07g021110.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.8e-08 61.2 36 77.8
Nitab4.5_0008348g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.1e-07 57.4 37 75.7
Psat0s1661g0120 Pisum sativum HOM05D000445 ORTHO05D000314 5.9e-06 53.5 54 51.9
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 5.9e-06 53.5 54 51.9
Psat0s680g0040 Pisum sativum HOM05D000445 ORTHO05D000314 5.9e-06 53.5 54 51.9
Psat2g138200 Pisum sativum HOM05D000445 ORTHO05D000314 5.9e-06 53.5 54 51.9


User provided reference genes

Program Settings