Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-161 573.2 300 100.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.9e-130 469.5 298 79.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.8e-125 453.0 303 77.9
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 6.9e-125 451.1 300 77.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 3.4e-124 448.7 300 76.7
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.3e-123 446.8 300 77.3
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.3e-118 430.3 301 73.1
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.1e-118 429.5 287 76.3
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.8e-117 426.4 299 75.3
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 4.0e-117 425.2 299 74.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.4e-116 422.2 300 72.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 4.5e-116 421.8 300 72.7
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-114 417.2 289 74.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.9e-114 416.4 274 77.7
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.9e-114 416.4 334 70.1
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.2e-114 415.2 277 75.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 7.1e-114 414.5 305 70.5
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.6e-113 413.3 303 71.6
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.0e-112 409.1 294 71.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 6.7e-112 407.9 307 70.0
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.5e-111 406.8 303 71.6
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.9e-111 406.4 286 72.0
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.9e-111 406.4 286 72.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.9e-111 406.4 288 71.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.5e-111 406.0 287 69.3
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 9.6e-111 404.1 300 71.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.6e-111 404.1 300 71.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-110 402.9 300 71.3
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.7e-110 402.1 303 68.6
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.8e-110 401.7 303 70.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.3e-110 401.4 300 70.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.1e-109 400.6 256 77.0
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.1e-109 400.6 302 69.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.4e-109 400.2 300 68.7
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.8e-109 399.8 306 67.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.0e-109 397.5 305 66.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-108 396.7 298 67.8
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.5e-108 396.7 276 72.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 2.0e-108 396.4 300 68.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.0e-108 396.4 286 71.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.5e-108 395.2 291 70.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.9e-108 394.8 278 73.4
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 7.6e-108 394.4 286 71.0
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 7.6e-108 394.4 304 67.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.0e-107 394.0 286 69.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.0e-107 394.0 300 67.0
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.3e-107 393.7 289 69.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.3e-107 393.7 304 67.1
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.2e-107 392.9 304 66.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-107 391.7 256 74.6
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 6.5e-107 391.3 278 73.4
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.1e-106 390.6 286 71.3
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.1e-106 390.6 300 68.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-106 390.6 322 66.1
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.1e-106 390.6 330 64.2
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-106 390.2 291 69.8
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-106 390.2 291 69.8
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.4e-106 390.2 300 69.0
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.4e-106 390.2 293 67.6
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.5e-106 389.4 286 69.9
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.5e-106 388.3 272 70.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 9.3e-106 387.5 300 65.7
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 9.3e-106 387.5 300 65.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-105 386.3 299 65.2
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.1e-105 386.3 302 68.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.1e-105 386.3 302 66.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.6e-105 385.2 275 70.5
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.6e-105 385.2 287 67.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.3e-104 383.6 290 65.9
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.3e-104 382.9 286 68.2
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 5.1e-104 381.7 287 68.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 8.7e-104 380.9 251 74.1
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-103 380.2 249 73.9
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 3.3e-103 379.0 254 73.2
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 3.3e-103 379.0 254 73.2
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 4.3e-103 378.6 315 62.9
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.3e-102 377.1 304 65.1
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.2e-102 376.3 256 71.1
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.8e-102 375.9 305 66.2
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 3.7e-102 375.6 250 73.2
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 8.2e-102 374.4 283 69.3
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.8e-101 373.2 304 64.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 2.4e-101 372.9 248 73.0
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 5.3e-101 371.7 269 69.1
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 5.3e-101 371.7 282 69.1
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.0e-100 369.8 254 72.0
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 3.4e-100 369.0 309 64.4
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 7.7e-100 367.9 312 65.1
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-99 366.7 257 68.5
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.7e-99 366.7 273 67.8
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.8e-99 365.5 253 71.5
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.5e-99 364.4 296 63.5
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.4e-98 363.6 288 62.5
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.9e-98 363.2 288 63.2
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.5e-98 362.8 309 63.8
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.2e-98 362.5 254 68.5
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 7.2e-98 361.3 235 74.9
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-97 360.1 289 65.7
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-97 360.1 289 65.7
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 2.3e-96 356.3 303 62.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 6.7e-96 354.8 296 63.2
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.5e-95 353.6 221 76.9
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.5e-95 352.8 309 60.5
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.3e-95 352.4 300 62.3
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 7.4e-95 351.3 287 63.8
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 9.7e-95 350.9 236 73.3
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.7e-94 350.1 300 63.0
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.1e-93 345.5 308 61.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.2e-91 339.7 279 62.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 4.2e-90 335.5 300 62.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 5.5e-90 335.1 254 65.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.7e-87 324.3 289 59.9
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.7e-86 322.4 254 62.2
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 8.2e-86 321.2 254 63.4
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.5e-82 308.5 252 62.3
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.8e-80 303.5 254 63.0
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.5e-79 300.4 235 61.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.0e-79 300.1 176 83.0
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 4.4e-79 298.9 287 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 3.7e-78 295.8 257 58.0
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 2.0e-76 290.0 240 59.2
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 5.5e-74 282.0 242 59.9
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-73 280.4 301 49.5
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.7e-73 278.9 247 57.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.0e-72 276.2 305 51.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.3e-70 268.5 206 67.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.0e-67 261.2 282 49.6
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-67 258.8 166 74.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.1e-61 239.6 215 55.8
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 5.9e-60 235.3 142 80.3
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 6.6e-59 231.9 250 50.8
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.6e-57 226.1 142 76.1
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.3e-54 217.6 142 71.1
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.4e-53 213.4 114 92.1
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.3e-50 201.8 257 43.2
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.5e-50 201.4 182 60.4
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.8e-47 192.2 127 74.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.0e-44 183.7 129 68.2
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 7.3e-42 175.3 137 63.5
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.5e-42 174.9 208 47.1
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 2.9e-38 163.3 233 43.3
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.9e-35 152.9 145 59.3
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 3.9e-35 152.9 255 39.6
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.3e-34 149.8 239 38.9
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.8e-30 136.3 84 78.6
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.5e-26 124.4 163 49.1
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.4e-24 117.9 82 64.6
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.1e-24 116.7 184 39.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 6.9e-24 115.5 88 61.4
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.4e-22 109.0 77 68.8
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 5.4e-21 105.9 200 39.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.3e-19 101.3 72 65.3
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 6.6e-19 99.0 139 46.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 5.6e-18 95.9 50 88.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.0e-16 89.7 62 64.5
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 5.8e-15 85.9 264 26.9
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 4.9e-14 82.8 277 26.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.2e-12 78.2 154 30.5
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.7e-12 77.0 168 30.4
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.1e-11 72.8 169 27.8
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.1e-09 67.4 156 28.2
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 4.5e-07 59.7 143 28.0
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-06 58.2 40 70.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-06 58.2 40 70.0


User provided reference genes

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