Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 4.3e-144 515.0 334 100.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 4.1e-110 402.1 318 79.6
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 6.5e-108 394.8 321 76.6
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 6.7e-105 384.8 321 79.4
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.4e-102 376.3 314 76.1
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 8.5e-100 367.9 319 77.7
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 9.4e-99 364.4 321 73.2
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-98 364.0 334 70.1
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.6e-96 356.3 318 76.1
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.7e-95 352.4 326 71.2
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.7e-95 352.4 326 71.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 7.7e-93 344.7 341 70.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.0e-92 344.4 317 70.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.1e-91 340.9 333 71.5
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 9.4e-91 337.8 333 71.2
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.2e-90 337.4 312 71.5
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.7e-90 336.3 329 72.3
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 3.6e-90 335.9 314 72.3
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.6e-90 335.9 311 73.6
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 5.2e-89 332.0 320 72.8
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 6.8e-89 331.6 318 68.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.2e-88 330.9 322 70.8
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 5.7e-88 328.6 322 69.6
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.2e-87 326.6 321 68.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.2e-87 326.6 321 68.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.8e-87 326.2 318 71.7
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-87 326.2 320 74.4
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.4e-86 323.9 331 67.1
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.4e-86 323.9 337 68.5
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.4e-86 322.0 319 67.7
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 7.0e-86 321.6 320 66.2
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.5e-85 318.9 319 71.8
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 7.7e-85 318.2 322 68.0
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.7e-84 317.0 311 68.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.3e-84 316.6 312 67.6
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.3e-84 316.6 328 68.6
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-84 316.2 318 66.7
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 2.9e-84 316.2 337 72.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.3e-83 312.8 349 55.9
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 7.3e-83 311.6 329 63.8
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-82 310.1 328 64.9
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.6e-82 309.3 329 64.4
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 3.6e-82 309.3 320 70.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 4.7e-82 308.9 328 64.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 4.7e-82 308.9 329 64.7
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.0e-82 308.1 323 68.7
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-81 307.8 328 64.9
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.4e-81 307.4 328 68.9
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 2.3e-81 306.6 334 66.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 3.0e-81 306.2 320 63.8
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 5.2e-81 305.4 329 64.4
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-80 303.9 323 64.7
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.6e-80 303.1 331 65.9
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.4e-80 302.8 322 67.1
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 4.4e-80 302.4 326 68.4
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.7e-80 302.0 319 68.0
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 9.8e-80 301.2 318 67.3
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-79 300.8 328 64.0
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-79 300.8 328 64.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.2e-79 300.1 329 63.5
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.2e-79 300.1 319 69.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.4e-78 297.4 320 66.6
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.4e-78 297.4 329 66.0
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.1e-78 295.8 328 65.9
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 5.4e-78 295.4 320 66.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 7.0e-78 295.0 320 65.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.2e-77 294.3 321 65.4
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.6e-77 293.9 324 65.7
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.6e-77 293.9 311 69.1
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.7e-77 293.1 303 65.7
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 5.9e-77 292.0 317 65.3
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.8e-77 291.6 315 66.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.8e-77 291.6 315 66.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.8e-77 291.6 320 64.7
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.8e-77 291.6 328 65.5
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.3e-76 290.0 321 66.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.9e-76 289.3 320 65.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 6.6e-76 288.5 355 57.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 4.3e-75 285.8 318 65.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 4.3e-75 285.8 329 63.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 7.3e-75 285.0 336 64.0
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.2e-74 284.3 320 65.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.6e-74 283.9 315 66.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 2.8e-74 283.1 315 66.0
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.6e-74 282.7 320 65.0
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 3.6e-74 282.7 328 64.6
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 8.0e-74 281.6 332 63.3
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-73 280.8 328 65.2
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.4e-73 280.8 337 60.2
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.8e-73 280.4 334 63.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-73 280.0 318 63.8
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.3e-73 280.0 318 63.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.2e-72 277.7 312 65.4
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.6e-72 276.6 318 64.8
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 4.4e-72 275.8 324 63.9
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 7.5e-72 275.0 326 64.4
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 8.3e-71 271.6 319 62.4
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.1e-70 271.2 326 64.7
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.1e-70 271.2 292 66.4
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 7.0e-70 268.5 302 63.6
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.0e-69 266.9 313 67.1
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.7e-68 263.8 310 63.2
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 8.6e-68 261.5 302 68.9
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-67 261.2 217 64.5
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 4.3e-67 259.2 245 65.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.1e-66 256.9 298 66.4
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 8.1e-66 255.0 301 67.4
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.1e-65 254.6 325 61.2
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 6.8e-65 251.9 304 64.8
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-64 251.1 235 60.4
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-63 247.3 216 65.3
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.7e-63 246.1 304 64.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.9e-62 243.8 313 60.1
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-61 241.1 296 64.5
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 2.3e-60 236.9 323 58.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.5e-59 233.4 324 56.8
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 3.3e-59 233.0 323 58.5
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.6e-59 232.3 306 59.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.8e-57 225.3 294 62.9
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.7e-55 220.7 306 57.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.1e-54 218.0 318 60.1
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-52 211.1 217 61.8
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-51 207.6 177 61.0
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-51 207.2 177 61.0
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 4.7e-50 202.6 180 64.4
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.4e-49 201.1 319 55.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-48 196.8 222 54.5
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-48 196.4 185 58.9
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-47 193.4 204 57.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 9.3e-46 188.3 217 52.5
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 6.0e-45 185.7 316 55.7
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-44 184.9 185 57.3
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.6e-43 179.1 177 57.6
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.3e-43 178.7 156 62.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 9.6e-43 178.3 152 62.5
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-41 174.1 157 59.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-39 166.8 183 54.6
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 4.9e-39 166.0 212 69.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 6.4e-39 165.6 153 60.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.9e-38 164.1 121 72.7
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.4e-38 163.7 137 65.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.2e-38 163.3 130 68.5
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 7.9e-37 158.7 157 59.2
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-36 158.3 131 66.4
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.0e-36 156.8 330 45.8
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.9e-35 154.1 150 66.0
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.5e-35 153.7 210 68.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.4e-32 143.3 146 61.6
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.6e-27 125.2 140 76.4
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.7e-23 114.4 147 51.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.7e-20 102.1 97 61.9
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-19 101.3 97 61.9
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-19 101.3 97 61.9
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 4.8e-18 96.3 66 69.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.8e-17 94.4 137 42.3
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-16 91.3 89 60.7
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.0e-16 90.9 96 52.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-15 88.2 75 64.0
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 3.8e-15 86.7 96 50.0
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.5e-14 84.0 66 68.2
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-13 81.6 78 60.3
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-13 80.1 102 47.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 9.1e-09 65.5 50 68.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.2e-08 65.1 47 66.0
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-06 58.2 61 55.7
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 7.2e-06 55.8 86 43.0


User provided reference genes

Program Settings