Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 0.0e+00 1341.3 664 100.0
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.6e-289 998.4 667 77.4
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 3.3e-289 998.0 670 76.6
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 3.7e-288 994.6 665 76.8
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 3.7e-280 968.0 667 75.1
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 4.8e-280 967.6 666 75.8
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 2.0e-278 962.2 657 75.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.8e-277 958.0 667 73.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 2.5e-276 955.3 677 73.3
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 2.3e-274 948.7 666 74.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 2.1e-243 845.9 687 64.3
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 8.9e-242 840.5 687 63.9
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.5e-241 839.7 681 64.0
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 2.1e-238 829.3 666 64.7
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 5.6e-236 821.2 675 64.0
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 9.6e-236 820.5 670 62.5
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 9.6e-236 820.5 674 63.4
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 6.2e-235 817.8 683 63.3
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.4e-234 815.8 673 63.4
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 1.4e-231 806.6 666 62.5
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 1.9e-231 806.2 669 63.8
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 1.6e-230 803.1 670 64.3
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 5.1e-229 798.1 679 61.9
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.9e-228 796.2 672 63.2
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.2e-225 786.9 662 63.6
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.2e-224 782.7 651 62.8
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 6.4e-224 781.2 668 61.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 6.4e-224 781.2 666 63.2
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 6.4e-224 781.2 673 60.9
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.1e-223 780.4 666 63.1
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.4e-223 779.2 667 61.2
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 2.4e-223 779.2 676 62.3
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 3.2e-223 778.9 679 60.8
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 3.2e-223 778.9 673 60.5
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 9.3e-223 777.3 693 60.0
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 9.3e-223 777.3 727 58.9
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.2e-222 776.9 669 61.1
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.6e-222 776.5 669 61.7
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 6.6e-221 771.2 673 61.1
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.9e-220 769.6 687 59.8
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 5.6e-220 768.1 672 59.7
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 9.6e-220 767.3 666 61.9
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.2e-219 764.6 703 58.0
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 6.4e-216 754.6 669 58.6
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.2e-215 751.9 669 59.8
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.6e-214 750.0 673 58.5
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 7.9e-214 747.7 682 58.5
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 3.0e-213 745.7 714 56.6
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 8.7e-213 744.2 705 57.4
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.1e-212 743.8 675 59.1
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.6e-211 740.0 672 57.4
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 2.1e-211 739.6 671 57.7
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 6.2e-211 738.0 672 59.1
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 6.2e-211 738.0 690 57.1
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.4e-209 732.3 643 59.7
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.0e-208 730.7 686 58.3
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.9e-208 728.4 639 59.8
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 2.5e-207 726.1 666 59.0
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.6e-206 723.4 654 59.6
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 1.3e-205 720.3 566 64.8
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-204 716.8 667 57.1
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 2.1e-203 713.0 661 57.8
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 8.2e-203 711.1 660 57.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 5.3e-202 708.4 663 57.5
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.2e-201 707.2 659 57.7
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.0e-201 706.4 660 57.1
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 4.5e-201 705.3 672 58.5
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 3.8e-200 702.2 640 58.3
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 6.5e-200 701.4 649 57.5
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 8.4e-200 701.0 663 57.9
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 1.1e-199 700.7 663 57.2
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.1e-199 700.7 662 56.6
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 2.5e-199 699.5 663 57.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 9.3e-199 697.6 664 57.2
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.2e-198 697.2 672 57.0
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 1.6e-195 686.8 625 58.4
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.4e-194 683.7 544 64.2
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.2e-191 672.5 662 55.7
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.6e-190 669.1 676 54.3
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 3.6e-190 669.1 653 55.7
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 4.6e-190 668.7 745 51.8
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.0e-188 663.3 637 55.6
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 3.8e-184 649.0 673 52.5
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 1.0e-168 597.8 553 57.3
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.7e-163 579.3 415 69.4
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 8.0e-158 561.6 674 49.1
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.0e-157 559.3 443 65.5
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.6e-153 547.4 691 45.7
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.0e-152 544.7 433 64.4
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 3.8e-152 542.7 629 49.3
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 5.6e-143 512.3 292 85.6
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.6e-142 509.6 393 67.7
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 2.3e-141 506.9 661 45.1
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.1e-135 488.0 645 45.3
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 5.8e-124 449.1 501 48.1
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 6.4e-123 445.7 396 60.6
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 3.2e-122 443.4 483 51.8
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.6e-108 397.1 468 51.1
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.1e-103 381.7 468 47.0
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 7.9e-97 359.0 562 41.8
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.6e-95 352.1 255 71.4
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.2e-92 345.1 263 69.2
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.5e-84 318.2 263 65.0
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.3e-83 315.1 195 77.4
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 3.0e-80 303.9 390 43.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.8e-78 297.4 360 50.0
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 8.2e-78 295.8 575 34.4
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.3e-77 293.1 652 35.1
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 7.7e-76 289.3 182 78.6
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.9e-75 287.3 187 74.9
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 5.5e-74 283.1 319 52.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 3.3e-71 273.9 356 46.3
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 7.4e-71 272.7 183 75.4
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 9.7e-71 272.3 356 46.3
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-68 265.4 183 68.9
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 8.5e-67 259.2 150 80.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 2.5e-66 257.7 363 41.6
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.1e-61 240.4 383 39.4
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 1.5e-58 231.9 461 35.6
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 8.0e-49 199.5 130 70.8
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 8.0e-41 172.9 210 49.5
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.0e-35 153.7 211 42.7
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.4e-29 135.6 233 39.1
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.3e-27 128.3 104 61.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 2.1e-25 121.7 148 48.6
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.1e-24 117.9 96 60.4
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 5.8e-23 113.6 116 50.0
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 9.5e-18 96.3 210 31.9
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.1e-16 92.8 96 51.0
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 3.4e-15 87.8 200 34.5
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-13 82.4 50 86.0
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 2.4e-13 81.6 82 48.8
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.1e-12 78.6 80 46.2
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.9e-10 72.0 63 54.0
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 4.3e-10 70.9 72 52.8
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.6e-07 61.6 60 56.7


User provided reference genes

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