Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.0e-256 888.6 455 100.0
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.9e-191 671.4 457 78.3
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 3.0e-188 662.1 443 78.3
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 5.6e-187 657.9 443 79.0
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.4e-185 653.3 456 77.4
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 5.8e-184 647.9 396 83.8
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 3.8e-183 645.2 395 83.3
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 6.4e-183 644.4 369 88.3
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 2.4e-182 642.5 450 76.4
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.1e-182 641.0 421 80.3
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 7.1e-182 641.0 386 84.5
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.2e-181 640.2 404 82.4
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.0e-180 637.1 393 83.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.8e-180 636.3 393 82.7
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.3e-180 636.0 456 75.2
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.3e-180 636.0 363 87.3
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.3e-180 636.0 360 89.2
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.3e-180 636.0 388 84.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 3.9e-180 635.2 363 87.1
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.1e-180 634.8 390 83.1
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 6.7e-180 634.4 415 80.0
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 8.7e-180 634.0 363 86.8
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 8.7e-180 634.0 367 88.0
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.9e-179 632.9 460 73.0
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.3e-179 632.1 386 83.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 3.3e-179 632.1 366 86.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.3e-178 630.2 427 77.3
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 2.8e-178 629.0 421 77.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.7e-178 628.6 425 78.4
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 6.2e-178 627.9 368 85.1
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.2e-178 627.9 368 85.6
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 8.1e-178 627.5 381 83.5
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 8.1e-178 627.5 366 86.1
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-177 627.1 371 84.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-177 626.3 371 84.4
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.8e-177 626.3 371 84.4
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.8e-177 626.3 399 81.2
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 3.1e-177 625.5 367 86.4
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 4.0e-177 625.2 363 85.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 6.9e-177 624.4 411 80.0
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.9e-177 624.4 371 85.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.2e-176 623.6 366 85.2
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-176 623.2 451 74.3
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-176 623.2 451 74.3
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.0e-176 622.9 368 84.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-176 622.5 360 86.1
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-176 622.5 360 86.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.7e-175 619.8 425 77.6
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.2e-175 619.4 386 80.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.9e-175 619.0 386 80.8
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.8e-175 618.6 360 85.3
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.4e-174 616.7 452 74.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 2.4e-174 615.9 401 77.8
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 3.2e-174 615.5 357 84.6
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 5.5e-174 614.8 370 84.3
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 5.5e-174 614.8 422 76.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.5e-174 614.8 401 79.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 9.3e-174 614.0 361 85.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.2e-173 613.6 367 83.4
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 2.7e-173 612.5 366 83.6
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 2.7e-173 612.5 366 83.6
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.6e-173 611.7 368 83.2
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 8.7e-172 607.4 397 79.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.1e-171 607.1 391 81.3
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.5e-171 605.9 363 83.5
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 4.3e-171 605.1 397 78.6
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 5.6e-171 604.7 385 80.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 9.6e-171 604.0 344 87.2
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 9.6e-171 604.0 355 84.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.8e-170 602.4 355 85.6
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 2.8e-170 602.4 385 79.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 3.7e-170 602.1 385 79.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.8e-169 599.7 339 87.6
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.5e-168 596.7 397 77.1
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 2.0e-168 596.3 439 71.1
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 2.6e-168 595.9 351 83.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.3e-167 593.6 338 87.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 6.5e-167 591.3 351 82.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.1e-166 590.5 445 70.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.4e-166 590.1 372 80.1
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.2e-166 589.0 351 83.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.2e-166 589.0 351 83.5
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 7.1e-166 587.8 394 77.7
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.1e-165 586.3 350 83.4
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.7e-165 585.9 343 85.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.6e-165 585.1 386 78.0
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 6.0e-165 584.7 335 86.9
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.0e-164 583.9 418 72.5
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.9e-163 579.7 395 75.2
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 4.3e-163 578.6 435 70.1
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 7.4e-163 577.8 364 81.0
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 9.7e-163 577.4 370 78.6
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.2e-160 570.5 465 65.6
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.6e-160 569.3 343 82.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.4e-153 547.0 418 72.2
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 6.9e-153 544.7 372 74.5
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 4.2e-150 535.4 325 83.4
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.2e-150 534.6 360 73.3
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.6e-149 533.5 432 66.9
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.1e-149 531.6 328 82.0
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 3.9e-148 528.9 309 84.8
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.1e-148 528.5 353 74.2
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.4e-147 525.4 313 84.0
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.8e-146 522.7 317 83.0
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.1e-142 510.8 338 74.3
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 4.2e-142 508.8 309 79.6
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.4e-140 503.8 366 68.6
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 3.0e-140 502.7 374 67.6
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 7.4e-139 498.0 358 75.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.3e-135 487.3 327 77.7
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.9e-134 483.4 380 65.5
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.8e-132 476.9 338 70.4
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 4.7e-125 452.2 406 63.5
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.0e-124 451.1 262 87.4
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.0e-123 446.8 277 82.3
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.8e-122 443.0 311 73.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 1.3e-119 434.1 260 82.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.7e-115 418.7 251 81.7
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 2.9e-98 363.2 206 88.3
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.2e-91 341.3 228 78.9
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 7.1e-89 332.0 204 81.9
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 9.2e-81 305.1 185 83.2
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 2.4e-76 290.4 347 45.5
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.9e-73 280.8 335 45.7
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.1e-65 255.0 362 46.7
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.8e-63 247.7 143 85.3
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.0e-60 236.5 132 87.1
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 7.9e-56 222.2 336 35.1
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 5.1e-55 219.5 122 86.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.2e-48 198.4 372 37.9
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.2e-41 173.7 104 80.8
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.2e-37 161.0 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-35 154.8 131 66.4
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.8e-34 150.2 130 64.6
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 1.3e-29 135.2 79 87.3
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 3.7e-29 133.7 84 78.6
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.5e-27 128.3 80 77.5
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.5e-27 128.3 80 77.5
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.5e-27 128.3 80 77.5
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.7e-26 124.8 101 61.4
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 8.5e-26 122.5 80 73.8
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 8.5e-26 122.5 80 73.8
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.5e-25 120.9 187 36.9
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 2.5e-25 120.9 103 64.1
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 3.2e-25 120.6 80 72.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.2e-25 120.2 78 73.1
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.2e-25 120.2 64 90.6
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.1e-20 105.5 64 82.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 4.2e-17 93.6 87 55.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 6.8e-15 86.3 54 83.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.4e-14 84.0 44 95.5
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 4.5e-11 73.6 67 56.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.9e-09 68.2 36 91.7
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 2.1e-08 64.7 40 75.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.6e-08 63.9 35 82.9
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.0e-07 62.4 37 75.7
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 1.0e-07 62.4 37 75.7
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 2.0e-06 58.2 40 80.0


User provided reference genes

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