Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0264161 Lupinus albus HOM05D003123 ORTHO05D003492 3.2e-49 198.0 92 100.0
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 4.4e-30 134.4 88 70.5
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 6.3e-29 130.6 87 72.4
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 2.4e-28 128.6 88 71.6
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 4.5e-27 124.4 88 69.3
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 4.5e-27 124.4 88 69.3
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 4.5e-27 124.4 88 69.3
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 2.5e-25 118.6 81 65.4
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 3.2e-25 118.2 86 62.8
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 7.2e-25 117.1 79 69.6
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.6e-24 115.9 85 65.9
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.1e-24 115.5 81 67.9
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 2.7e-24 115.2 89 61.8
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 2.7e-24 115.2 92 60.9
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 2.7e-24 115.2 83 66.3
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 2.7e-24 115.2 87 65.5
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 3.6e-24 114.8 81 69.1
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 4.7e-24 114.4 90 61.1
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.4e-23 112.8 85 64.7
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.8e-23 112.5 85 63.5
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 2.3e-23 112.1 90 57.8
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 5.2e-23 110.9 81 66.7
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 5.2e-23 110.9 89 60.7
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 6.8e-23 110.5 78 61.5
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 6.8e-23 110.5 90 58.9
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 1.2e-22 109.8 89 60.7
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 2.6e-22 108.6 87 64.4
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 3.4e-22 108.2 91 58.2
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 7.5e-22 107.1 89 57.3
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 7.5e-22 107.1 89 60.7
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 7.5e-22 107.1 83 62.7
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 1.3e-21 106.3 88 61.4
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 1.7e-21 105.9 90 61.1
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.7e-21 105.9 89 57.3
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 1.7e-21 105.9 83 57.8
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 1.7e-21 105.9 90 60.0
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 2.2e-21 105.5 91 59.3
RcHm_v2.0_Chr2g0090591 Rosa chinensis HOM05D003123 ORTHO05D003492 2.8e-21 105.1 81 60.5
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 3.7e-21 104.8 82 59.8
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 4.8e-21 104.4 88 58.0
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 4.8e-21 104.4 90 56.7
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 1.1e-20 103.2 82 63.4
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.1e-20 103.2 82 63.4
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.1e-20 103.2 82 63.4
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 1.1e-20 103.2 90 61.1
FAN07G0983 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.4e-20 102.8 78 62.8
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.4e-20 102.8 78 64.1
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.4e-20 102.8 78 64.1
MD15G1186700 Malus domestica HOM05D003123 ORTHO05D003492 1.4e-20 102.8 82 61.0
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.8e-20 102.4 81 63.0
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.4e-20 102.1 81 63.0
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.4e-20 102.1 87 57.5
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.1e-20 101.3 81 60.5
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 4.1e-20 101.3 77 63.6
Cpa.g.sc66.20 Carica papaya HOM05D003123 ORTHO05D003492 5.4e-20 100.9 83 57.8
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 7.0e-20 100.5 89 53.9
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.2e-19 99.8 89 53.9
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 1.6e-19 99.4 77 62.3
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 1.6e-19 99.4 74 62.2
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.6e-19 99.4 81 61.7
SalBow1G3093 Salvia bowleyana HOM05D003123 ORTHO05D003492 1.6e-19 99.4 92 54.3
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 1.6e-19 99.4 79 58.2
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 2.0e-19 99.0 89 53.9
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 2.0e-19 99.0 89 56.2
SalBow1G3749 Salvia bowleyana HOM05D003123 ORTHO05D003492 2.0e-19 99.0 77 58.4
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 2.0e-19 99.0 78 60.3
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 2.0e-19 99.0 92 54.3
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 2.7e-19 98.6 78 59.0
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 4.5e-19 97.8 81 60.5
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 7.7e-19 97.1 90 53.3
SGA_v2.0_scaffold413G51179 Striga asiatica HOM05D003123 ORTHO05D003492 1.7e-18 95.9 78 59.0
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 2.2e-18 95.5 75 60.0
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 3.8e-18 94.7 84 53.6
FAN28G0861 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.8e-18 94.7 83 56.6
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 3.8e-18 94.7 74 58.1
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 3.8e-18 94.7 75 60.0
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 5.0e-18 94.4 81 60.5
CARHR064860 Cardamine hirsuta HOM05D003123 ORTHO05D003492 5.0e-18 94.4 90 54.4
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 5.0e-18 94.4 76 61.8
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 6.5e-18 94.0 77 59.7
A07p30420 Brassica napus HOM05D003123 ORTHO05D003492 6.5e-18 94.0 92 53.3
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 6.5e-18 94.0 77 59.7
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 6.5e-18 94.0 77 59.7
BraA07t30679Z Brassica rapa HOM05D003123 ORTHO05D003492 6.5e-18 94.0 92 53.3
Aa31LG4G8580 Aethionema arabicum HOM05D003123 ORTHO05D003492 8.5e-18 93.6 91 53.8
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 1.1e-17 93.2 80 56.2
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.5e-17 92.8 86 50.0
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.5e-17 92.8 86 50.0
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 1.5e-17 92.8 81 53.1
EL10Ac3g07342 Beta vulgaris HOM05D003123 ORTHO05D003492 2.5e-17 92.0 94 52.1
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 2.5e-17 92.0 76 59.2
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 3.2e-17 91.7 93 52.7
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 3.2e-17 91.7 77 62.3
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 3.2e-17 91.7 77 62.3
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 3.2e-17 91.7 83 49.4
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 5.5e-17 90.9 80 57.5
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 9.5e-17 90.1 84 52.4
ECA234G4206 Erigeron canadensis HOM05D001066 ORTHO05D000891 1.2e-16 89.7 81 55.6
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 1.6e-16 89.4 77 59.7
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 2.8e-16 88.6 75 56.0
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 2.8e-16 88.6 90 51.1
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.0e-15 86.7 71 59.2
unitig_0.g2667 Utricularia gibba HOM05D003123 ORTHO05D003492 3.0e-15 85.1 79 51.9
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 8.8e-15 83.6 78 47.4
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 8.8e-15 83.6 109 45.0
ATR1136G200 Amborella trichopoda HOM05D003123 ORTHO05D003492 1.2e-14 83.2 80 50.0
HPP92_013254 Vanilla planifolia HOM05D003123 ORTHO05D003492 1.5e-14 82.8 87 43.7
THA.LOC104800122 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 4.4e-14 81.3 87 49.4
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 5.7e-14 80.9 76 53.9
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 7.5e-14 80.5 118 39.0
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 9.8e-14 80.1 107 44.9
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 1.3e-13 79.7 73 56.2
CDE04G2204 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 2.2e-13 79.0 86 47.7
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 2.2e-13 79.0 69 60.9
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 4.9e-13 77.8 54 64.8
Os02g0116000 Oryza sativa ssp. japonica HOM05D003123 ORTHO05D003492 1.1e-12 76.6 73 50.7
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 1.1e-12 76.6 118 39.0
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 1.8e-12 75.9 86 47.7
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 7.0e-12 73.9 79 50.6
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 9.2e-12 73.6 56 57.1
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 2.7e-11 72.0 66 53.0
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 3.5e-11 71.6 48 66.7
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 5.9e-11 70.9 58 51.7
Zm00001eb265630 Zea mays HOM05D003123 ORTHO05D003492 5.9e-11 70.9 86 41.9
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 7.8e-11 70.5 39 74.4
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 1.0e-10 70.1 52 59.6
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 1.3e-10 69.7 52 61.5
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 2.3e-10 68.9 53 60.4
VMungo1080G1725 Vigna mungo HOM05D003123 ORTHO05D003492 6.6e-10 67.4 50 60.0
HPP92_013245 Vanilla planifolia HOM05D003123 ORTHO05D003492 8.6e-10 67.0 72 43.1
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 1.5e-09 66.2 59 55.9
Hund19062 Selenicereus undatus HOM05D003123 ORTHO05D003492 1.9e-09 65.9 60 53.3
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 3.3e-09 65.1 60 56.7
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 8.0e-08 60.5 59 54.2
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 5.2e-07 57.8 106 35.8
AL2G31680 Arabidopsis lyrata HOM05D003123 ORTHO05D003492 1.2e-06 56.6 59 47.5
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 5.7e-06 54.3 45 66.7
Eucgr.A00588 Eucalyptus grandis HOM05D003123 ORTHO05D003492 7.5e-06 53.9 32 71.9


User provided reference genes

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