Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1919.1 990 100.0
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1770.0 990 91.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1638.6 991 84.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1637.5 990 84.8
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1611.7 990 82.9
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1580.5 990 81.2
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1580.1 990 81.2
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1566.2 991 81.8
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1563.1 990 80.4
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1533.1 995 78.9
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1518.8 991 77.8
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1515.4 991 78.2
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1483.4 991 76.3
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1478.0 991 76.0
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1474.1 991 75.5
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 991 75.2
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 970 76.7
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1464.5 991 75.1
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1460.3 993 74.8
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 991 75.7
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1457.6 991 75.1
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1457.2 991 74.9
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1455.7 991 73.9
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 994 74.8
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1454.1 991 73.3
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 995 75.6
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 992 73.2
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1445.3 991 74.4
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1444.5 992 72.9
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 991 74.5
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1440.6 1025 73.8
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1438.7 993 73.6
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1436.4 991 72.5
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1434.5 991 73.6
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1433.7 994 73.8
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 992 73.1
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 980 73.1
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 980 72.6
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 991 74.7
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 991 73.0
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1429.1 992 73.1
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1426.0 1005 72.3
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1424.5 996 72.6
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1417.5 1016 72.3
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 991 73.0
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1416.4 992 71.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1413.3 988 71.1
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1412.1 994 71.6
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1411.4 993 72.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1409.0 986 72.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 993 71.5
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 992 72.4
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1400.6 991 73.2
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 993 71.5
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1397.5 1075 67.0
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1394.8 995 71.5
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1393.6 991 71.6
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1393.3 992 71.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1390.9 991 72.8
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1390.2 991 70.2
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 993 70.9
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1387.5 991 72.4
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1384.8 970 72.9
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1380.9 991 70.4
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 991 69.6
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 993 71.5
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1377.5 964 72.4
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1374.4 991 70.2
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1373.2 994 71.2
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 994 69.9
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1362.8 997 71.6
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1349.3 991 69.7
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1347.0 961 69.5
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1347.0 963 72.6
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1345.9 993 68.6
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1343.6 993 70.1
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1342.8 991 68.5
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1341.3 994 69.4
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1336.6 991 69.2
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1333.9 919 73.8
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 991 68.8
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1329.7 991 69.8
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 897 74.5
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1327.4 994 68.5
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 963 70.5
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1320.8 994 69.5
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1311.2 1004 67.1
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1310.8 994 68.5
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1309.3 993 68.4
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1304.7 994 67.9
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1302.3 994 68.3
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1302.3 981 67.3
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1302.3 981 67.3
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 992 66.4
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1281.9 997 66.4
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1261.5 991 66.0
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1249.2 940 69.1
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1223.8 964 65.5
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1203.0 972 63.4
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1197.2 723 85.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1169.8 993 60.0
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1159.8 863 69.4
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1151.0 912 67.0
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1107.8 999 59.4
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.0e-294 1016.9 993 53.8
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.2e-289 999.2 911 59.7
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.3e-284 983.4 1001 52.7
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.2e-282 976.9 1002 52.7
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 2.3e-278 962.6 999 49.8
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 4.5e-274 948.3 996 48.9
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 6.1e-271 937.9 1000 50.8
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.5e-264 916.8 611 75.1
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.2e-260 902.9 598 75.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 8.6e-257 891.0 842 56.3
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 8.3e-252 874.4 743 61.6
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.6e-250 870.2 608 72.9
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 2.8e-239 832.8 986 45.3
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.5e-229 800.4 808 51.9
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.0e-204 718.0 1086 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 2.5e-200 703.4 884 42.4
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 4.8e-167 592.8 428 70.8
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 6.4e-143 512.7 356 72.2
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.1e-142 511.9 304 80.9
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 8.9e-137 492.3 312 77.9
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 3.9e-124 450.3 1194 29.5
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.9e-84 317.4 265 62.6
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.9e-84 317.4 265 62.6
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 4.2e-70 270.8 1077 25.5
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.3e-55 222.6 240 47.9
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 6.3e-42 177.2 933 23.2
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.7e-34 152.5 143 57.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 9.5e-30 136.7 143 54.5
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.2e-27 129.8 122 60.7
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 9.8e-27 126.7 85 75.3
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.5e-19 102.8 110 50.9
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.6e-15 87.4 108 47.2
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 1.1e-06 60.1 49 55.1
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 2.5e-06 58.9 45 68.9
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 2.5e-06 58.9 45 68.9


User provided reference genes

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