Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.5e-107 392.9 199 100.0
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.7e-92 342.8 199 84.4
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.5e-91 339.7 199 83.9
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.3e-91 338.6 199 83.4
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 5.3e-89 331.3 198 81.8
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.4e-88 328.6 198 80.8
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 9.9e-88 327.0 198 80.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.3e-87 326.6 199 81.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.9e-86 322.8 199 80.9
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 2.3e-84 315.8 198 78.3
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.3e-82 310.1 198 77.8
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.8e-82 308.9 198 77.8
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.8e-81 306.2 198 77.3
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-81 305.8 208 73.6
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 4.0e-81 305.1 198 74.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 5.3e-81 304.7 198 75.3
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 5.3e-81 304.7 198 76.3
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.0e-80 302.8 198 75.3
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 3.4e-80 302.0 198 74.2
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.8e-80 301.2 198 76.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.3e-79 300.1 198 75.3
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.9e-79 298.9 198 76.3
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.8e-79 298.5 198 75.3
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 3.8e-79 298.5 198 75.3
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 4.9e-79 298.1 198 74.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.9e-79 298.1 189 77.2
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 6.5e-79 297.7 198 73.7
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 8.4e-79 297.4 189 78.3
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.1e-78 297.0 189 77.2
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.9e-78 296.2 198 73.2
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.9e-78 296.2 198 74.2
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.5e-78 295.8 198 71.7
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 3.2e-78 295.4 198 73.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 4.2e-78 295.0 198 74.2
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.2e-78 295.0 198 70.7
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 7.1e-78 294.3 198 71.2
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 7.1e-78 294.3 198 71.2
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 7.1e-78 294.3 198 70.7
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 7.1e-78 294.3 189 76.2
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.3e-78 293.9 198 73.7
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 9.3e-78 293.9 198 74.7
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.2e-77 293.5 198 70.7
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-77 293.5 189 75.7
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.2e-77 293.5 198 72.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.6e-77 293.1 199 72.9
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.1e-77 292.7 189 75.1
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.1e-77 292.7 198 70.2
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.7e-77 292.4 198 72.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.5e-77 292.0 188 76.6
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 4.6e-77 291.6 198 71.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 6.0e-77 291.2 189 75.1
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 6.0e-77 291.2 189 75.1
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 6.0e-77 291.2 189 76.2
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 7.9e-77 290.8 188 76.1
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 7.9e-77 290.8 198 71.2
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.9e-77 290.8 198 71.7
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 7.9e-77 290.8 198 71.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.0e-76 290.4 198 70.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.0e-76 290.4 198 70.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.0e-76 290.4 198 72.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.0e-76 290.4 198 72.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.8e-76 289.7 195 69.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.8e-76 289.7 198 70.7
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.3e-76 289.3 198 71.2
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.3e-76 289.3 188 76.6
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-76 289.3 198 72.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 3.0e-76 288.9 188 74.5
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 5.1e-76 288.1 198 69.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 8.7e-76 287.3 198 69.7
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.7e-76 287.3 198 73.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 2.5e-75 285.8 198 72.7
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.3e-75 285.4 198 71.2
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.3e-75 285.0 198 73.2
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.7e-75 284.6 198 71.7
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.6e-74 283.1 199 72.9
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.8e-74 282.3 189 74.6
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 6.3e-74 281.2 188 76.6
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 6.3e-74 281.2 198 73.7
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-73 280.4 189 74.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.1e-73 280.4 204 71.1
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.4e-73 280.0 173 78.6
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.4e-73 279.3 189 74.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.1e-73 278.9 189 73.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.1e-73 278.5 201 68.2
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 6.9e-73 277.7 188 73.9
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 6.9e-73 277.7 175 80.0
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.2e-72 276.9 199 70.9
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-72 276.2 180 76.1
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.6e-72 275.8 179 76.0
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 3.4e-72 275.4 195 71.3
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.0e-71 273.9 188 73.9
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.3e-71 273.5 188 72.3
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.7e-71 273.1 198 71.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 6.5e-71 271.2 198 68.2
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 8.5e-71 270.8 188 71.8
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 8.5e-71 270.8 188 71.8
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.5e-70 269.2 184 70.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.2e-70 268.9 198 67.7
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 9.3e-70 267.3 198 66.2
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.1e-69 266.2 198 67.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.1e-69 266.2 189 68.3
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.1e-69 264.6 198 65.2
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.3e-68 263.5 189 68.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.7e-68 261.2 174 71.8
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 6.7e-68 261.2 192 69.3
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 4.3e-67 258.5 198 64.6
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 5.7e-67 258.1 198 65.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 9.7e-67 257.3 176 68.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-66 256.5 190 69.5
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 1.4e-65 253.4 198 61.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 2.6e-64 249.2 328 46.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.5e-64 248.4 190 68.4
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 7.7e-64 247.7 167 76.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.9e-63 245.7 179 69.8
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.5e-62 242.7 198 63.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.3e-60 236.1 208 58.2
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 3.9e-60 235.3 198 60.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 4.4e-59 231.9 186 67.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.1e-57 225.7 248 51.2
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 5.9e-56 221.5 235 54.9
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.0e-55 220.7 217 55.3
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.1e-53 211.5 233 53.6
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 8.8e-52 207.6 197 52.8
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 6.3e-50 201.4 195 52.3
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.0e-47 194.1 195 53.3
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 5.5e-46 188.3 223 48.9
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.8e-44 183.3 115 75.7
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 8.8e-44 181.0 128 71.9
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 2.6e-43 179.5 201 48.3
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.4e-41 172.9 112 75.9
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.7e-40 169.5 173 51.4
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.7e-40 169.5 116 75.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 8.5e-39 164.5 112 70.5
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.8e-36 156.8 144 54.2
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.7e-34 149.1 103 72.8
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.4e-33 147.1 202 41.6
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 3.1e-33 146.0 112 64.3
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-32 143.7 94 71.3
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.9e-30 136.7 85 74.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.2e-30 135.6 124 58.1
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.2e-30 135.6 84 76.2
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.3e-28 129.8 72 84.7
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.8e-28 128.3 72 83.3
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 4.4e-27 125.6 85 70.6
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.4e-25 120.6 198 41.4
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.6e-24 117.1 131 49.6
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.6e-23 111.7 77 72.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.9e-22 110.2 68 80.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.4e-20 104.0 97 58.8
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 4.0e-20 102.4 74 64.9
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-19 100.5 70 67.1
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-18 97.4 69 68.1
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.7e-18 97.1 70 72.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 2.9e-18 96.3 75 64.0
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.3e-18 94.7 110 50.9
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 2.4e-17 93.2 194 33.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.6e-16 90.5 194 32.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.9e-14 83.6 103 46.6
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.8e-13 79.7 49 71.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 8.9e-12 74.7 45 75.6
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 3.7e-10 69.3 45 71.1
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 7.0e-09 65.1 70 47.1
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 1.1e-06 57.8 48 56.2
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.1e-06 57.8 42 69.0
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 2.5e-06 56.6 40 70.0
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 7.3e-06 55.1 40 60.0
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 9.5e-06 54.7 42 59.5


User provided reference genes

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