Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 7.0e-32 140.2 81 100.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.5e-13 79.3 49 77.6
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.9e-13 79.0 68 67.6
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.8e-12 75.1 46 76.1
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 6.2e-12 73.9 48 70.8
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.4e-11 72.8 42 78.6
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.4e-11 72.8 49 71.4
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.8e-11 72.4 43 76.7
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-11 71.6 43 72.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.5e-10 69.3 43 72.1
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-10 68.9 43 69.8
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.0e-10 68.9 43 69.8
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.6e-10 68.6 42 78.6
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.6e-10 68.6 38 81.6
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.6e-10 68.6 43 72.1
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 2.6e-10 68.6 49 65.3
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.4e-10 68.2 41 75.6
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.4e-10 68.2 49 67.3
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.8e-10 67.4 44 65.9
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 5.8e-10 67.4 40 75.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.5e-10 67.0 40 72.5
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 7.5e-10 67.0 39 76.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 9.9e-10 66.6 79 45.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.3e-09 66.2 68 52.9
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-09 66.2 43 69.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.3e-09 66.2 40 72.5
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.7e-09 65.9 43 72.1
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-09 65.5 42 69.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 2.2e-09 65.5 63 49.2
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.2e-09 65.5 66 51.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.9e-09 65.1 40 72.5
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 6.4e-09 63.9 37 78.4
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 8.3e-09 63.5 42 66.7
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 8.3e-09 63.5 51 60.8
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 8.3e-09 63.5 68 47.1
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 8.3e-09 63.5 39 71.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-08 62.8 45 66.7
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 1.9e-08 62.4 38 73.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-08 62.0 47 61.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.2e-08 61.6 42 64.3
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.1e-08 61.2 68 58.8
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.4e-08 60.8 49 57.1
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 5.4e-08 60.8 75 42.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 7.1e-08 60.5 40 67.5
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.2e-08 60.1 49 57.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.2e-08 60.1 49 57.1
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.2e-07 59.7 44 63.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.2e-07 59.7 53 54.7
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 1.2e-07 59.7 43 60.5
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.7e-07 58.5 68 55.9
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.7e-07 58.5 68 55.9
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.5e-07 58.2 41 63.4
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.5e-07 58.2 72 40.3
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.5e-07 58.2 51 54.9
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 4.6e-07 57.8 37 70.3
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 4.6e-07 57.8 42 61.9
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 4.6e-07 57.8 66 47.0
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.6e-07 57.8 49 59.2
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.6e-07 57.8 37 64.9
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.0e-07 57.4 36 72.2
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.0e-07 57.4 68 57.4
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.8e-07 57.0 52 63.5
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 7.8e-07 57.0 35 74.3
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.0e-06 56.6 59 55.9
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.0e-06 56.6 46 58.7
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.0e-06 56.6 43 60.5
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 44 59.1
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 47 51.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.3e-06 56.2 44 59.1
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.3e-06 56.2 44 59.1
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-06 56.2 44 56.8
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.7e-06 55.8 47 51.1
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 59.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 69.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.7e-06 55.8 38 63.2
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 1.7e-06 55.8 44 56.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.0e-06 55.1 40 60.0
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 3.0e-06 55.1 49 55.1
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 3.9e-06 54.7 46 60.9
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 3.9e-06 54.7 45 51.1
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 3.9e-06 54.7 49 51.0
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.9e-06 54.7 50 50.0
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.9e-06 54.7 50 50.0
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.9e-06 54.7 50 50.0
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 3.9e-06 54.7 42 54.8
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.1e-06 54.3 37 64.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 5.1e-06 54.3 37 64.9
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 5.1e-06 54.3 36 63.9
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 5.1e-06 54.3 36 63.9
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 5.1e-06 54.3 46 52.2
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 5.1e-06 54.3 36 63.9
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 5.1e-06 54.3 46 52.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 5.1e-06 54.3 37 64.9
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.1e-06 54.3 68 39.7
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 5.1e-06 54.3 37 64.9
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.3 49 53.1
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.6e-06 53.9 35 65.7
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 6.6e-06 53.9 48 54.2
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 6.6e-06 53.9 43 53.5
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.6e-06 53.9 61 44.3
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 6.6e-06 53.9 46 56.5
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 6.6e-06 53.9 59 45.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 8.6e-06 53.5 47 57.4
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 8.6e-06 53.5 43 53.5
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 8.6e-06 53.5 44 56.8
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 8.6e-06 53.5 47 48.9


User provided reference genes

Program Settings