Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.4e-136 489.6 240 100.0
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 8.8e-115 417.2 240 85.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 7.5e-114 414.1 240 83.3
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.7e-113 412.9 240 83.8
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.1e-112 410.2 240 84.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.1e-112 410.2 240 84.2
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 9.1e-112 407.1 240 83.8
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 9.1e-112 407.1 240 83.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 3.5e-111 405.2 240 83.3
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.7e-110 402.9 240 83.3
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.1e-109 400.2 237 81.0
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 7.0e-104 380.9 240 76.2
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 7.7e-103 377.5 240 74.6
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 7.7e-103 377.5 238 74.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 6.5e-102 374.4 240 74.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 8.5e-102 374.0 240 74.2
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 5.5e-101 371.3 240 73.8
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.2e-100 370.2 236 75.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.0e-99 367.1 236 73.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.0e-99 365.5 232 74.1
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 6.8e-99 364.4 239 74.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 6.8e-99 364.4 232 73.3
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 8.8e-99 364.0 226 76.1
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.0e-98 362.8 229 74.7
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.0e-98 362.8 236 72.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 7.5e-98 360.9 237 73.4
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 7.5e-98 360.9 227 74.0
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 9.8e-98 360.5 227 74.0
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 9.8e-98 360.5 237 71.7
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 2.8e-97 359.0 236 72.5
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.9e-97 358.2 229 73.8
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 8.3e-97 357.5 238 68.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.1e-96 357.1 240 70.4
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.4e-96 355.9 239 69.5
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.1e-96 355.5 230 72.6
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 5.4e-96 354.8 240 71.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 5.4e-96 354.8 224 72.3
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 5.4e-96 354.8 240 70.4
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 7.0e-96 354.4 240 70.4
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 9.2e-96 354.0 227 73.1
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 9.2e-96 354.0 240 70.4
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 9.2e-96 354.0 225 73.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.2e-95 353.6 227 73.1
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-95 353.6 225 73.8
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.6e-95 353.2 240 70.0
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.0e-95 352.8 222 75.2
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.0e-94 350.5 227 72.7
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 6.6e-94 347.8 226 73.9
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 6.6e-94 347.8 227 68.7
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 8.6e-94 347.4 227 72.7
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.5e-93 346.7 254 66.9
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 2.5e-93 345.9 227 73.6
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 7.3e-93 344.4 225 72.4
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 9.5e-93 344.0 229 69.0
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 9.5e-93 344.0 234 70.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 9.5e-93 344.0 228 72.8
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.1e-92 342.8 228 68.9
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.8e-92 342.4 240 67.1
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.6e-92 342.0 227 70.9
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 6.1e-92 341.3 227 72.2
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.0e-91 340.5 235 69.4
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.0e-91 340.5 229 69.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.4e-91 340.1 228 69.3
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 3.0e-91 339.0 226 69.0
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 2.0e-90 336.3 228 69.3
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 2.0e-90 336.3 228 69.3
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 2.0e-90 336.3 226 69.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 4.4e-90 335.1 226 69.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 7.5e-90 334.3 230 68.7
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 9.8e-90 334.0 229 68.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 9.8e-90 334.0 229 70.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.7e-89 333.2 222 70.3
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 68.6
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 68.6
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 68.6
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 2.2e-89 332.8 229 68.6
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 4.9e-89 331.6 236 66.5
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 4.9e-89 331.6 229 68.1
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.0e-88 327.8 228 69.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 7.0e-88 327.8 270 61.9
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.6e-87 326.6 223 67.3
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 3.0e-86 322.4 229 68.1
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.0e-86 322.4 222 69.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 8.6e-86 320.9 277 60.6
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.9e-85 319.7 227 66.1
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 7.3e-85 317.8 227 67.0
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.8e-84 315.8 209 69.4
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 5.8e-82 308.1 227 63.4
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 3.7e-81 305.4 222 64.9
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.4e-80 302.8 197 72.6
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 4.6e-79 298.5 237 65.4
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.7e-78 296.6 220 66.8
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.3e-77 292.4 195 72.3
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.4e-74 282.0 222 60.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.3e-70 270.4 241 62.2
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.5e-69 266.9 186 68.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.6e-68 263.5 241 59.8
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 8.1e-68 261.2 184 69.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 6.4e-65 251.5 224 54.0
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.4e-64 250.4 222 54.5
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.9e-62 242.3 155 72.9
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.9e-56 223.4 241 50.6
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.5e-53 213.8 199 59.3
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.1e-51 207.6 158 62.7
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.5e-50 202.2 138 71.7
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 5.8e-50 201.8 264 42.4
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 3.2e-48 196.1 237 46.4
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-45 187.2 128 71.1
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 7.4e-45 184.9 240 44.6
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 7.6e-42 174.9 232 40.9
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.2e-40 169.1 209 46.9
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.2e-33 146.7 172 46.5
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 3.5e-31 139.4 265 36.6
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 3.7e-28 129.4 112 58.9
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.2e-25 120.2 80 71.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-19 101.3 73 61.6
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.1e-19 98.2 127 46.5
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 7.7e-18 95.1 64 65.6
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-15 87.8 64 65.6
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.8e-11 73.9 39 89.7
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-11 72.8 46 69.6
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 5.3e-11 72.4 50 70.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 7.7e-10 68.6 49 59.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.2e-08 63.2 138 29.7
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 3.9e-06 56.2 45 57.8


User provided reference genes

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