Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 1.5e-33 146.0 93 100.0
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 2.8e-16 88.6 102 52.9
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 2.8e-16 88.6 100 51.0
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 8.1e-16 87.0 94 50.0
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 1.1e-15 86.7 103 50.5
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 1.4e-15 86.3 102 50.0
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 3.1e-15 85.1 102 51.0
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 3.1e-15 85.1 104 48.1
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 4.0e-15 84.7 103 51.5
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-14 82.8 103 49.5
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-14 82.8 103 49.5
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 3.4e-14 81.6 107 47.7
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 3.4e-14 81.6 113 58.4
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 1.3e-13 79.7 102 49.0
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 4.9e-13 77.8 88 48.9
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 4.2e-12 74.7 96 49.0
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 4.6e-11 71.2 101 60.4
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 4.6e-11 71.2 105 58.1
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 4.6e-11 71.2 55 67.3
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 4.6e-11 71.2 60 63.3
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 7.8e-11 70.5 94 45.7
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.9e-10 68.2 62 59.7
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 5.1e-10 67.8 62 58.1
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 6.6e-10 67.4 62 58.1
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 8.7e-10 67.0 63 55.6
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.1e-09 66.6 59 61.0
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-09 66.6 63 55.6
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.5e-09 66.2 114 36.8
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.5e-09 66.2 67 55.2
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.5e-09 66.2 67 55.2
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 1.5e-09 66.2 60 58.3
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.5e-09 66.2 60 58.3
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.5e-09 66.2 104 41.3
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 2.5e-09 65.5 61 57.4
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.5e-09 65.5 121 38.0
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.5e-09 65.5 121 38.0
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 2.5e-09 65.5 64 57.8
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 3.3e-09 65.1 60 56.7
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.3e-09 65.1 61 59.0
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.3e-09 64.7 121 38.0
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.6e-09 64.3 67 53.7
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.6e-09 64.3 67 53.7
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 7.3e-09 63.9 67 53.7
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 7.3e-09 63.9 68 52.9
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 7.3e-09 63.9 63 55.6
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 7.3e-09 63.9 63 55.6
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 9.6e-09 63.5 108 36.1
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 9.6e-09 63.5 61 55.7
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.3e-08 63.2 115 36.5
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 1.3e-08 63.2 60 55.0
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.6e-08 62.8 59 55.9
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.6e-08 62.8 61 55.7
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.6e-08 62.8 61 57.4
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.6e-08 62.8 62 56.5
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.6e-08 62.8 63 55.6
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 2.1e-08 62.4 58 58.6
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.1e-08 62.4 60 61.7
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.1e-08 62.4 61 57.4
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.1e-08 62.4 63 54.0
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.1e-08 62.4 104 40.4
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 2.8e-08 62.0 65 53.8
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.8e-08 62.0 104 40.4
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 3.6e-08 61.6 64 53.1
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.8e-08 61.2 66 51.5
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 4.8e-08 61.2 62 53.2
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.8e-08 61.2 61 55.7
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.8e-08 61.2 59 52.5
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 4.8e-08 61.2 61 55.7
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 8.1e-08 60.5 62 50.0
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 8.1e-08 60.5 111 38.7
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 8.1e-08 60.5 62 54.8
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 8.1e-08 60.5 62 54.8
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 8.1e-08 60.5 109 39.4
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.4e-07 59.7 61 54.1
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 1.4e-07 59.7 58 55.2
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.4e-07 59.7 111 38.7
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.4e-07 59.7 114 35.1
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.4e-07 59.7 60 55.0
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.4e-07 59.7 69 52.2
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.4e-07 59.7 60 56.7
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 1.4e-07 59.7 69 50.7
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 1.8e-07 59.3 62 51.6
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.8e-07 59.3 60 53.3
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 3.1e-07 58.5 68 51.5
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.1e-07 58.5 60 53.3
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 3.1e-07 58.5 58 55.2
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 3.1e-07 58.5 59 59.3
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 4.0e-07 58.2 63 50.8
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.0e-07 58.2 63 52.4
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.0e-07 58.2 63 50.8
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 6.9e-07 57.4 59 54.2
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.2e-06 56.6 66 48.5
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 1.2e-06 56.6 57 52.6
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 1.2e-06 56.6 64 46.9
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.5e-06 56.2 105 36.2
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 1.5e-06 56.2 62 54.8
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.5e-06 56.2 64 50.0
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 1.5e-06 56.2 58 53.4
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 2.0e-06 55.8 113 39.8
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.0e-06 55.8 58 56.9
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 2.6e-06 55.5 62 50.0
Carub.0007s1942 Capsella rubella HOM05D003074 ORTHO05D002434 2.6e-06 55.5 66 45.5
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.6e-06 55.5 64 50.0
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.6e-06 55.5 63 50.8
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.4e-06 55.1 62 48.4
AL7G31910 Arabidopsis lyrata HOM05D003074 ORTHO05D002434 3.4e-06 55.1 66 43.9
AT4G21920 Arabidopsis thaliana HOM05D003074 ORTHO05D002434 3.4e-06 55.1 66 45.5
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 3.4e-06 55.1 76 48.7
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.4e-06 54.7 57 52.6
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 4.4e-06 54.7 112 34.8
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 4.4e-06 54.7 60 48.3
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 4.4e-06 54.7 60 51.7
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 5.8e-06 54.3 60 50.0
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 5.8e-06 54.3 60 51.7
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 7.6e-06 53.9 110 38.2
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 7.6e-06 53.9 60 56.7
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 7.6e-06 53.9 95 34.7
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 9.9e-06 53.5 89 40.4
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 9.9e-06 53.5 56 51.8


User provided reference genes

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