Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.4e-48 195.3 108 100.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.4e-48 195.3 108 100.0
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 5.0e-17 91.3 74 64.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 8.5e-17 90.5 71 66.2
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 7.2e-16 87.4 104 51.0
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-15 86.7 64 68.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.4e-14 83.2 70 64.3
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 5.2e-14 81.3 95 53.7
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 8.8e-14 80.5 91 51.6
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.1e-13 80.1 88 53.4
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.5e-13 79.7 89 53.9
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.5e-13 79.7 89 53.9
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.3e-13 78.6 61 62.3
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 5.7e-13 77.8 98 49.0
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 9.7e-13 77.0 60 68.3
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.3e-12 76.6 104 43.3
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.7e-12 76.3 60 58.3
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 3.7e-12 75.1 74 56.8
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.3e-12 74.3 105 44.8
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.3e-12 74.3 87 48.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 6.3e-12 74.3 87 50.6
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 8.2e-12 73.9 84 51.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 8.2e-12 73.9 74 52.7
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.1e-11 73.6 67 55.2
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.1e-11 73.6 68 51.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.1e-11 73.6 60 56.7
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-11 73.6 84 51.2
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.4e-11 73.2 60 51.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.4e-11 72.4 93 46.2
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.4e-11 72.4 93 46.2
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.4e-11 72.4 93 46.2
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.1e-11 72.0 74 50.0
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.1e-11 72.0 84 50.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.1e-11 72.0 76 47.4
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.1e-11 72.0 98 43.9
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.1e-11 71.6 84 50.0
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 5.3e-11 71.2 70 54.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 5.3e-11 71.2 69 55.1
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 7.0e-11 70.9 85 44.7
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 9.1e-11 70.5 60 55.0
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 9.1e-11 70.5 60 55.0
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.6e-10 69.7 60 53.3
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.6e-10 69.7 100 44.0
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.5e-10 68.6 74 43.2
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.5e-10 68.6 106 37.7
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.5e-10 68.2 99 42.4
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.9e-10 67.8 80 50.0
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.9e-10 67.8 99 41.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.9e-10 67.8 67 46.3
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 5.9e-10 67.8 67 46.3
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.7e-10 67.4 60 50.0
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 7.7e-10 67.4 60 51.7
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.0e-09 67.0 68 47.1
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.7e-09 66.2 56 57.1
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.7e-09 66.2 110 39.1
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.2e-09 65.9 62 46.8
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.2e-09 65.9 66 50.0
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 2.2e-09 65.9 66 51.5
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.9e-09 65.5 105 39.0
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.9e-09 65.5 51 58.8
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 2.9e-09 65.5 110 36.4
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 3.8e-09 65.1 104 38.5
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.8e-09 65.1 63 49.2
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.8e-09 65.1 65 47.7
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 5.0e-09 64.7 90 38.9
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.5e-09 64.3 65 46.2
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.5e-09 63.9 77 40.3
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.5e-09 63.9 96 41.7
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 8.5e-09 63.9 63 49.2
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 8.5e-09 63.9 59 49.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 8.5e-09 63.9 59 49.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 8.5e-09 63.9 59 49.2
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.1e-08 63.5 93 37.6
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.1e-08 63.5 85 40.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.5e-08 63.2 59 49.2
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.5e-08 63.2 62 48.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.5e-08 63.2 58 53.4
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.9e-08 62.8 60 50.0
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-08 62.8 69 47.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-08 62.8 69 47.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.9e-08 62.8 69 47.8
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.5e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.2e-08 62.0 58 56.9
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 4.2e-08 61.6 51 56.9
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.2e-08 61.6 86 40.7
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 4.2e-08 61.6 97 40.2
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 5.5e-08 61.2 51 56.9
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 7.2e-08 60.8 51 54.9
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-08 60.8 51 54.9
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 7.2e-08 60.8 51 54.9
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 7.2e-08 60.8 72 41.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.2e-08 60.8 60 48.3
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 7.2e-08 60.8 89 39.3
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 9.4e-08 60.5 90 41.1
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 9.4e-08 60.5 51 52.9
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 9.4e-08 60.5 102 48.0
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-07 60.1 51 54.9
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.2e-07 60.1 97 46.4
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.2e-07 60.1 72 41.7
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.6e-07 59.7 71 39.4
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.6e-07 59.7 82 42.7
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.1e-07 59.3 53 50.9
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.1e-07 59.3 51 51.0
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-07 58.9 51 54.9
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-07 58.9 51 54.9
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-07 58.9 51 54.9
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-07 58.9 51 54.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 2.7e-07 58.9 106 35.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 2.7e-07 58.9 112 37.5
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 3.6e-07 58.5 85 37.6
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.6e-07 58.5 51 49.0
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.7e-07 58.2 110 32.7
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.7e-07 58.2 51 52.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 8.0e-07 57.4 51 52.9
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 8.0e-07 57.4 51 52.9
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 8.0e-07 57.4 55 54.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-06 57.0 51 51.0
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.4e-06 56.6 83 42.2
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.4e-06 56.6 51 51.0
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.4e-06 56.6 97 37.1
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.8e-06 56.2 55 47.3
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.8e-06 56.2 51 49.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.8e-06 56.2 55 52.7
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.8e-06 56.2 52 46.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 2.3e-06 55.8 51 49.0
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.0e-06 55.5 67 38.8
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.0e-06 55.5 49 53.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 3.0e-06 55.5 68 41.2
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 5.2e-06 54.7 96 35.4
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 5.2e-06 54.7 51 51.0
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.7e-06 54.3 107 32.7
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 6.7e-06 54.3 50 52.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 6.7e-06 54.3 52 50.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.7e-06 54.3 56 50.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 6.7e-06 54.3 64 42.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 8.8e-06 53.9 49 51.0


User provided reference genes

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