Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 0.0e+00 1146.3 577 100.0
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 3.8e-249 864.8 565 77.7
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.2e-245 853.2 579 75.1
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 5.7e-245 850.9 563 76.9
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 1.3e-244 849.7 566 76.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.3e-244 849.7 567 77.2
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 9.2e-243 843.6 544 80.0
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.6e-242 842.8 565 77.0
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.4e-238 829.7 555 77.3
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 8.9e-238 827.0 507 80.9
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-235 819.7 550 76.7
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.4e-235 819.7 550 76.7
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.4e-235 819.7 582 73.4
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 5.0e-233 811.2 516 79.1
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 4.3e-232 808.1 491 82.3
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 9.5e-232 807.0 569 72.9
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.8e-231 805.4 569 73.8
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 4.7e-231 804.7 560 74.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 4.7e-231 804.7 543 76.1
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.1e-230 803.5 574 72.0
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.8e-230 802.7 507 78.9
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.1e-230 802.0 491 81.1
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 5.2e-230 801.2 542 76.0
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.8e-230 800.8 508 78.0
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 8.9e-230 800.4 572 72.0
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-229 800.0 508 77.8
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.6e-229 798.9 508 78.1
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 9.8e-229 797.0 507 78.7
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.3e-228 796.6 491 80.4
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.7e-228 796.2 561 73.1
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 4.9e-228 794.7 572 72.9
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 5.4e-227 791.2 517 77.2
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 9.2e-227 790.4 554 73.3
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 9.2e-227 790.4 491 80.0
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 9.2e-227 790.4 480 80.8
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.2e-226 790.0 547 74.8
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 2.0e-226 789.3 566 72.6
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 6.0e-226 787.7 565 72.0
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.7e-225 786.2 551 75.0
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.0e-225 785.4 522 75.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 5.0e-225 784.6 573 72.3
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 6.6e-225 784.3 491 77.8
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.1e-224 783.5 539 74.0
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.5e-224 783.1 574 71.6
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 2.5e-224 782.3 490 79.4
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 4.3e-224 781.6 491 79.2
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 9.5e-224 780.4 486 79.4
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.6e-223 779.6 517 75.8
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.6e-223 779.6 562 71.2
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 1.1e-222 776.9 474 81.4
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 1.4e-222 776.5 550 70.9
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 6.8e-222 774.2 477 80.3
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.5e-221 773.1 561 71.7
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 3.4e-221 771.9 508 76.4
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 9.9e-221 770.4 502 76.7
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.2e-220 769.2 565 69.7
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.1e-219 766.9 571 69.7
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.9e-219 766.1 489 76.9
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.9e-219 766.1 487 77.0
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.9e-219 766.1 491 77.2
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 2.4e-219 765.8 489 78.1
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 3.2e-219 765.4 499 76.6
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 4.1e-219 765.0 489 76.9
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 7.1e-219 764.2 489 76.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.1e-218 762.7 470 80.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 3.5e-218 761.9 488 77.5
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.5e-218 761.9 488 77.3
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.6e-218 761.5 482 77.4
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 7.8e-218 760.8 482 78.4
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.3e-217 759.2 488 76.4
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.0e-217 758.8 490 76.1
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 3.0e-217 758.8 482 77.6
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 3.9e-217 758.4 490 76.9
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 5.1e-217 758.1 481 77.1
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 9.5e-216 753.8 488 76.4
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.6e-213 745.7 524 72.1
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.4e-211 740.0 497 74.4
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 5.4e-211 738.0 506 75.5
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.5e-210 735.3 472 76.3
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.6e-210 734.9 472 76.3
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 6.0e-210 734.6 454 80.8
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.7e-209 733.0 541 68.9
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.0e-209 732.3 549 69.2
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 5.1e-209 731.5 557 67.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.1e-208 730.3 472 73.7
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.5e-208 729.9 555 67.0
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 7.3e-208 727.6 505 73.9
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 7.3e-208 727.6 471 76.2
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 6.2e-207 724.5 558 65.8
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.2e-207 724.5 556 67.8
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.2e-206 721.5 525 69.7
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 7.6e-205 717.6 487 72.1
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 1.2e-202 710.3 512 68.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.5e-202 708.8 558 64.7
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.0e-202 708.0 440 79.3
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.3e-201 706.8 447 79.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.3e-199 700.3 410 83.4
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 8.4e-196 687.6 484 69.8
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.2e-195 685.6 491 71.7
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.3e-185 652.9 512 66.4
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.3e-185 652.9 488 66.4
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.3e-185 652.9 489 64.0
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.6e-184 648.3 488 66.4
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.3e-183 647.1 488 66.2
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 4.8e-183 645.2 557 63.6
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 6.5e-180 634.8 478 69.2
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.0e-178 628.2 445 72.6
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 7.9e-178 627.9 504 62.1
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.0e-177 625.9 475 63.4
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 5.1e-177 625.2 464 65.5
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 5.1e-169 598.6 422 72.3
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 4.3e-168 595.5 487 61.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.9e-164 582.8 473 59.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 8.5e-164 581.3 475 57.5
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.8e-156 555.8 474 57.0
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.1e-154 550.1 511 55.4
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.0e-145 521.2 486 52.3
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.2e-144 517.7 433 64.0
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 5.0e-140 502.3 372 71.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.4e-137 494.2 319 78.4
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.1e-131 474.6 330 73.0
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 7.0e-126 455.3 487 47.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.3e-124 451.1 490 48.2
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.3e-71 275.0 163 80.4
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.4e-65 255.0 483 32.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.4e-56 223.8 154 72.7
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 9.1e-41 172.6 426 27.7
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 2.6e-40 171.0 102 78.4
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.5e-30 138.7 72 88.9
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.0e-24 118.2 80 77.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 3.4e-19 100.9 487 23.0
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 1.3e-15 89.0 67 67.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.0e-12 79.3 426 26.1
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 8.6e-07 59.7 28 96.4


User provided reference genes

Program Settings