Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 2.1e-97 359.0 177 100.0
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 5.6e-66 254.6 185 68.6
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 5.2e-64 248.1 186 66.1
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 3.4e-63 245.4 185 67.0
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 4.1e-61 238.4 186 64.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 3.0e-59 232.3 186 64.5
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 9.5e-58 227.3 161 67.1
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 4.9e-54 214.9 158 70.9
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 4.9e-54 214.9 158 70.9
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 4.9e-54 214.9 158 70.9
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 3.5e-52 208.8 189 58.2
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 2.3e-51 206.1 173 60.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 8.6e-51 204.1 185 60.0
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 2.8e-49 199.1 146 64.4
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.6e-49 198.7 145 65.5
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.1e-48 197.2 145 64.8
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 3.1e-48 195.7 153 62.1
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 3.1e-48 195.7 185 54.6
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 5.2e-48 194.9 186 57.0
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 2.0e-47 193.0 142 69.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 7.6e-47 191.0 151 64.2
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 2.2e-46 189.5 137 69.3
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 2.9e-46 189.1 184 55.4
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 4.9e-46 188.3 163 61.3
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 8.4e-46 187.6 151 63.6
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.1e-45 187.2 187 54.5
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.4e-45 186.8 149 61.7
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 1.9e-45 186.4 145 64.1
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 5.4e-45 184.9 151 62.3
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.2e-44 183.7 165 58.2
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.2e-44 183.7 191 53.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.0e-44 181.4 152 60.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 7.8e-44 181.0 127 66.1
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.0e-43 180.6 186 54.8
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 1.0e-43 180.6 151 61.6
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.0e-43 180.6 104 80.8
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.7e-43 179.9 155 60.0
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 2.3e-43 179.5 104 77.9
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 6.6e-43 177.9 129 69.0
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 8.7e-43 177.6 150 60.7
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 8.7e-43 177.6 149 61.1
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 1.5e-42 176.8 123 68.3
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 1.9e-42 176.4 99 79.8
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 2.5e-42 176.0 107 72.0
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 3.3e-42 175.6 186 50.0
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 4.3e-42 175.3 185 51.4
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 7.3e-42 174.5 185 52.4
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 7.3e-42 174.5 107 72.0
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.3e-41 173.7 129 65.9
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 1.3e-41 173.7 127 64.6
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 1.3e-41 173.7 192 53.1
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.3e-41 173.7 147 59.9
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 2.1e-41 172.9 186 51.1
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 3.6e-41 172.2 186 52.7
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 4.8e-41 171.8 128 66.4
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 6.2e-41 171.4 127 63.8
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 8.1e-41 171.0 128 64.1
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 8.1e-41 171.0 169 54.4
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.1e-40 170.6 148 58.8
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.1e-40 170.6 112 72.3
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.4e-40 170.2 104 73.1
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.4e-40 170.2 121 66.9
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.4e-40 170.2 127 63.8
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 1.8e-40 169.9 127 66.1
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.4e-40 169.5 100 79.0
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.4e-40 169.5 104 73.1
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 4.0e-40 168.7 154 58.4
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 4.0e-40 168.7 123 66.7
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 4.0e-40 168.7 119 67.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.3e-40 168.3 109 68.8
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 9.0e-40 167.5 132 64.4
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 9.0e-40 167.5 138 62.3
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.2e-39 167.2 123 64.2
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 2.0e-39 166.4 176 50.6
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 2.6e-39 166.0 187 50.8
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 3.4e-39 165.6 137 59.9
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 3.4e-39 165.6 123 64.2
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 3.4e-39 165.6 129 62.8
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.4e-39 165.6 129 63.6
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 3.4e-39 165.6 129 63.6
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 3.4e-39 165.6 127 63.0
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 4.4e-39 165.2 130 63.8
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 5.8e-39 164.9 145 59.3
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 5.8e-39 164.9 127 62.2
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 5.8e-39 164.9 145 59.3
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 9.9e-39 164.1 145 59.3
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.3e-38 163.7 154 55.2
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 2.9e-38 162.5 157 53.5
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.9e-38 162.5 99 74.7
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 4.9e-38 161.8 130 61.5
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 6.4e-38 161.4 130 61.5
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 6.4e-38 161.4 128 63.3
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.1e-37 160.6 148 56.1
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 1.1e-37 160.6 186 47.8
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 3.2e-37 159.1 111 68.5
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.2e-37 158.7 125 61.6
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 9.3e-37 157.5 186 47.3
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 1.2e-36 157.1 161 51.6
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.6e-36 156.8 82 87.8
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 2.7e-36 156.0 185 47.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 4.6e-36 155.2 161 50.9
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 4.6e-36 155.2 130 62.3
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 7.9e-36 154.5 106 66.0
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 5.6e-34 148.3 99 66.7
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.6e-34 148.3 99 66.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 5.6e-34 148.3 99 66.7
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.6e-34 147.5 99 67.7
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 9.6e-34 147.5 90 71.1
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.6e-33 145.6 99 65.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.6e-33 145.6 99 65.7
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 6.2e-33 144.8 181 46.4
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 8.1e-33 144.4 94 72.3
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 2.9e-30 136.0 78 74.4
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 5.4e-29 131.7 98 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 2.7e-28 129.4 142 45.1
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 7.9e-28 127.9 130 48.5
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 3.7e-25 119.0 141 39.7
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 4.0e-24 115.5 109 48.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.5e-23 113.6 88 55.7
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.2e-21 105.5 139 45.3
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-20 103.6 94 54.3
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 3.0e-19 99.4 70 62.9
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 3.9e-19 99.0 123 40.7
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 6.7e-19 98.2 79 53.2
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 2.8e-17 92.8 131 40.5
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.9e-16 88.2 105 47.6
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 7.6e-15 84.7 122 41.0
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 7.2e-13 78.2 110 40.0
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.2e-12 77.4 90 50.0
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.0e-11 74.3 87 46.0
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.7e-11 71.2 90 47.8
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.2e-09 66.6 119 31.1
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 3.7e-09 65.9 42 69.0
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.4e-08 63.9 78 35.9
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.8e-08 63.5 81 44.4
BolC6t37424H Brassica oleracea HOM05D005893 ORTHO05D007295 5.0e-06 55.5 71 45.1


User provided reference genes

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