Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 9.4e-203 709.9 342 100.0
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.2e-189 666.4 342 92.4
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.4e-179 630.2 340 88.8
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 4.4e-176 621.3 339 87.0
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.8e-175 618.6 342 87.1
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.0e-173 612.5 339 84.7
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 5.0e-172 607.8 339 85.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.5e-171 605.5 343 85.1
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.5e-171 605.5 343 85.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 4.7e-170 601.3 341 84.2
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 9.8e-168 593.6 342 83.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.3e-167 593.2 340 83.2
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.0e-161 572.0 348 77.9
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 6.8e-161 570.9 348 78.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.2e-159 565.8 358 76.8
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 8.3e-159 563.9 345 79.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.2e-158 562.0 356 76.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 9.2e-158 560.5 355 76.6
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 3.5e-157 558.5 350 76.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.9e-157 557.8 356 77.0
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-156 556.6 349 77.9
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.5e-155 553.1 340 79.4
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.5e-155 553.1 350 76.6
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.3e-155 551.6 352 77.3
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.2e-154 550.1 353 75.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.6e-154 549.7 355 75.2
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.4e-153 546.6 336 78.6
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.3e-153 545.8 353 73.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.0e-153 545.0 340 76.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.2e-152 543.5 353 73.7
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.5e-152 543.1 341 78.0
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-152 542.3 351 75.5
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.6e-152 542.3 351 75.5
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 4.4e-152 541.6 354 75.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.8e-152 540.4 348 74.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.8e-152 540.4 348 74.1
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.2e-151 539.3 353 73.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 8.3e-151 537.3 340 77.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.1e-150 537.0 372 72.3
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.4e-150 536.6 349 74.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.4e-150 536.6 354 72.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.2e-150 535.4 351 74.4
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 4.1e-150 535.0 351 73.8
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.1e-150 535.0 334 78.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 5.4e-150 534.6 348 75.9
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.0e-150 534.3 348 74.4
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 7.0e-150 534.3 365 72.9
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.6e-149 533.1 347 74.4
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.6e-149 533.1 348 74.7
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.3e-148 530.0 342 74.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.7e-148 529.6 347 74.1
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.9e-148 528.5 348 72.4
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.9e-148 528.5 349 72.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.9e-148 528.5 374 71.9
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.0e-148 528.1 348 73.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-147 526.6 347 74.1
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.9e-147 526.2 362 72.9
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.3e-147 525.4 348 74.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.3e-147 525.0 347 73.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 5.6e-147 524.6 370 70.0
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 7.3e-147 524.2 342 74.3
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 8.1e-146 520.8 373 69.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-145 520.4 350 73.1
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-145 518.5 350 71.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.0e-144 516.2 349 72.5
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.4e-144 515.4 364 70.6
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.8e-144 514.6 347 72.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.7e-143 513.1 349 72.2
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-143 512.7 342 72.8
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.2e-143 512.7 350 72.0
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.9e-143 512.3 340 72.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.7e-143 511.9 342 72.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.9e-142 509.6 348 71.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.1e-142 507.7 348 70.4
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.1e-141 506.1 341 72.1
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-140 503.8 345 72.5
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.3e-140 503.4 344 70.9
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.7e-140 503.1 342 72.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.6e-139 498.0 344 71.2
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 5.6e-139 498.0 344 71.8
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 9.5e-139 497.3 340 72.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-138 494.6 344 71.8
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 8.1e-138 494.2 344 72.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.1e-137 493.8 339 72.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.4e-137 493.4 365 69.3
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.8e-137 493.0 344 70.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.1e-137 492.3 344 70.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 4.0e-137 491.9 371 66.3
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.6e-136 489.2 344 70.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.4e-136 488.4 344 70.9
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.8e-136 488.0 353 70.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.9e-135 485.7 340 71.5
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.8e-135 485.3 340 71.5
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.1e-134 483.8 344 68.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.2e-134 482.3 323 70.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 5.4e-134 481.5 340 70.0
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.1e-134 481.1 340 71.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 9.2e-134 480.7 336 71.7
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.7e-133 479.2 336 71.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.6e-133 478.4 340 70.9
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.6e-133 478.4 340 70.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 6.0e-133 478.0 325 72.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.3e-132 476.1 346 68.8
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 6.6e-132 474.6 336 70.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.5e-131 472.6 346 68.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.8e-130 469.2 354 66.9
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.0e-129 465.3 377 61.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-128 463.8 367 65.7
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.4e-128 462.2 339 68.4
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 5.8e-128 461.5 344 68.9
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.3e-127 460.3 341 66.0
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.7e-127 459.9 364 64.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-126 456.8 334 69.5
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.4e-126 456.8 353 63.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.0e-124 450.7 353 64.0
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-124 449.1 340 67.6
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 3.0e-124 449.1 320 71.2
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 5.1e-124 448.4 414 57.7
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 4.3e-123 445.3 340 66.8
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.3e-122 443.7 351 64.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.1e-122 443.0 521 48.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 9.0e-121 437.6 333 65.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.5e-120 435.3 306 68.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 7.6e-120 434.5 330 65.5
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.3e-119 433.7 321 69.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 7.9e-117 424.5 426 55.2
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.6e-115 417.5 327 63.6
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.4e-113 413.7 357 59.9
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.4e-113 412.9 408 55.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.7e-111 406.8 365 59.2
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.1e-110 404.1 312 66.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.2e-104 384.0 364 55.5
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 5.1e-100 368.6 343 57.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 7.6e-96 354.8 334 56.3
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.2e-90 336.7 230 70.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.2e-86 322.8 378 48.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 6.1e-85 318.5 378 46.6
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.4e-75 285.8 303 53.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.7e-75 285.4 189 76.2
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 7.4e-75 285.0 164 79.3
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.3e-74 282.0 211 70.1
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.8e-73 280.4 374 46.0
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.1e-73 279.6 379 42.7
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.9e-70 270.4 344 43.6
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 2.1e-69 266.9 245 60.0
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 2.1e-69 266.9 245 60.0
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.7e-69 266.5 225 65.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.0e-68 264.6 238 54.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 6.3e-66 255.4 388 39.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.9e-63 246.5 213 62.4
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 5.5e-54 215.7 180 63.9
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.3e-52 210.3 134 79.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 3.8e-47 193.0 128 67.2
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.8e-37 160.2 102 74.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-36 157.9 360 32.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.2e-33 146.7 346 32.1
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.4e-33 146.0 122 59.0
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.1e-28 130.2 72 75.0
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 4.9e-18 96.3 78 65.4
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.8e-16 89.0 63 68.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.5e-08 63.5 33 72.7


User provided reference genes

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