Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 4.8e-91 337.8 171 100.0
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.2e-78 296.6 164 90.2
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.3e-72 275.8 171 80.7
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 5.0e-72 274.6 164 82.3
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 6.6e-72 274.2 164 81.1
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 9.5e-71 270.4 164 80.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.2e-70 270.0 164 81.7
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 8.0e-70 267.3 164 79.9
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 8.0e-70 267.3 164 79.3
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.6e-68 262.3 164 77.4
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.6e-68 262.3 164 78.0
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 4.4e-68 261.5 162 79.0
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 4.4e-68 261.5 164 78.0
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.9e-67 258.8 156 82.1
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 8.3e-67 257.3 164 76.8
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.1e-66 256.9 164 77.4
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 74.4
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 1.9e-66 256.1 164 76.2
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.2e-66 255.4 164 76.2
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 75.6
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 1.6e-65 253.1 164 74.4
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 3.5e-65 251.9 164 75.6
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 4.6e-65 251.5 164 75.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 7.8e-65 250.8 164 75.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 7.8e-65 250.8 164 75.0
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.0e-64 250.4 164 74.4
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 74.4
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 74.4
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 73.2
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 73.8
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 74.4
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 74.4
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.3e-64 249.2 164 74.4
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 3.0e-64 248.8 164 73.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 3.9e-64 248.4 164 73.8
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.9e-64 248.4 164 72.6
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 5.0e-64 248.1 164 73.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 5.0e-64 248.1 164 73.8
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 6.6e-64 247.7 164 71.3
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 6.6e-64 247.7 164 72.6
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 8.6e-64 247.3 164 73.2
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 73.2
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.6
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.5e-63 246.5 164 70.7
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.5e-63 245.7 173 69.4
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.3e-63 245.4 164 73.2
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 3.3e-63 245.4 164 73.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 7.3e-63 244.2 164 71.3
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 71.3
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 2.1e-62 242.7 174 71.8
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.6e-62 241.9 164 68.9
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.6e-62 241.9 164 68.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 8.0e-62 240.7 164 71.3
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.1e-61 240.4 164 69.5
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 1.8e-61 239.6 164 68.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.3e-61 239.2 164 67.1
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 2.3e-61 239.2 164 69.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 3.1e-61 238.8 164 72.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 5.2e-61 238.0 164 66.5
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 6.8e-61 237.7 164 69.5
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.8e-61 237.7 164 68.9
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 6.8e-61 237.7 164 67.1
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.2e-60 236.9 188 64.4
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.6e-60 235.7 164 67.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.4e-60 235.3 164 67.7
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 5.8e-60 234.6 191 63.4
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 5.8e-60 234.6 164 66.5
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 5.8e-60 234.6 164 66.5
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 7.5e-60 234.2 164 66.5
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 9.8e-60 233.8 164 67.7
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 9.8e-60 233.8 166 68.1
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 9.8e-60 233.8 162 68.5
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.3e-59 233.4 164 67.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.3e-59 233.4 164 68.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.3e-59 233.4 164 67.7
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.3e-59 233.4 164 67.1
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 2.2e-59 232.6 193 62.7
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.2e-59 232.6 164 66.5
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.9e-59 232.3 185 64.3
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 3.7e-59 231.9 164 64.6
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 3.7e-59 231.9 166 67.5
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.7e-59 231.9 164 67.7
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 4.9e-59 231.5 164 65.9
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 6.4e-59 231.1 161 67.7
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 6.4e-59 231.1 164 65.9
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 68.3
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 65.2
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.9e-58 229.6 166 66.3
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.2e-58 228.8 164 67.1
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 4.1e-58 228.4 164 64.0
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 5.4e-58 228.0 164 65.2
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 5.4e-58 228.0 164 65.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.6e-57 226.5 156 69.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.0e-56 223.8 164 64.6
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 64.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 5.1e-56 221.5 171 62.6
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 7.3e-55 217.6 164 62.8
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.2e-54 216.9 164 63.4
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 61.6
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 63.4
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.6e-54 216.5 164 63.4
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 4.0e-53 211.8 164 62.2
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 9.9e-52 207.2 162 58.6
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.7e-51 206.5 164 56.1
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 2.4e-50 202.6 164 61.0
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 5.4e-50 201.4 133 73.7
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 5.4e-50 201.4 164 57.9
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.9e-43 179.1 221 48.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 6.4e-43 177.9 117 76.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.4e-43 177.6 164 49.4
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.2e-42 175.3 168 54.8
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 9.3e-42 174.1 173 51.4
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.2e-41 173.7 166 55.4
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 4.6e-41 171.8 170 51.8
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 3.3e-39 165.6 164 51.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 9.6e-39 164.1 132 59.1
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 1.3e-35 153.7 168 43.5
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 8.4e-35 151.0 168 45.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.6e-33 146.7 121 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 3.5e-33 145.6 157 43.3
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 8.7e-32 141.0 98 68.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.1e-31 140.6 97 70.1
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.8e-29 133.3 162 45.7
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.5e-28 130.2 82 75.6
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 9.9e-28 127.5 94 67.0
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.3e-27 127.1 81 74.1
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.7e-27 126.7 82 72.0
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 2.2e-27 126.3 82 72.0
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 4.9e-27 125.2 89 67.4
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.9e-26 123.2 151 43.7
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 9.6e-23 110.9 100 59.0
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 8.1e-22 107.8 65 78.5
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 1.2e-17 94.0 69 62.3
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.6e-17 93.6 119 37.8
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 3.5e-17 92.4 57 68.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 6.7e-16 88.2 81 51.9
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 2.4e-13 79.7 46 82.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 6.9e-13 78.2 47 70.2
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.2e-12 77.4 45 73.3
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 2.6e-12 76.3 48 79.2
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.4e-12 75.9 50 74.0
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.2e-10 69.3 46 60.9
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 4.2e-10 68.9 44 77.3
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.2e-09 67.4 99 42.4
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 3.3e-07 59.3 32 87.5


User provided reference genes

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