Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.2e-72 278.1 457 100.0
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 3.0e-39 167.2 114 72.8
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.1e-38 165.2 121 69.4
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 3.5e-35 153.7 102 73.5
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.7e-31 139.4 85 78.8
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.2e-30 138.7 85 77.6
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.3e-29 135.2 81 77.8
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.8e-29 133.3 90 72.2
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.4e-28 131.7 81 76.5
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.1e-28 130.6 79 79.7
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 4.5e-27 126.7 116 52.6
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.3e-26 125.2 86 68.6
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.2e-26 124.4 84 73.8
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.9e-26 124.0 104 58.7
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.1e-25 122.1 81 74.1
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.9e-25 121.3 114 49.1
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 3.2e-25 120.6 79 73.4
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 2.1e-24 117.9 107 51.4
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 2.7e-24 117.5 85 63.5
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 6.1e-24 116.3 80 72.5
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.0e-23 115.5 82 67.1
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.0e-23 115.5 107 50.5
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.3e-23 114.4 107 53.3
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 8.8e-23 112.5 112 48.2
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 8.8e-23 112.5 85 63.5
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.2e-22 112.1 82 63.4
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.2e-22 112.1 119 45.4
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.5e-22 111.7 104 49.0
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.0e-22 111.3 80 63.8
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.0e-22 111.3 84 64.3
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.0e-22 111.3 120 43.3
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 5.7e-22 109.8 85 61.2
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.5e-22 109.4 68 72.1
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.3e-21 108.6 84 64.3
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.7e-21 108.2 78 65.4
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.7e-21 108.2 70 68.6
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.7e-21 108.2 85 60.0
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.7e-21 108.2 82 62.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.7e-21 108.2 79 63.3
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 2.2e-21 107.8 71 69.0
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.2e-21 107.8 67 73.1
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 2.2e-21 107.8 67 73.1
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.8e-21 107.5 78 64.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 6.3e-21 106.3 111 45.9
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.3e-21 105.9 71 71.8
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.1e-20 105.5 76 65.8
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.1e-20 105.5 71 71.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 2.4e-20 104.4 80 58.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.4e-20 104.4 67 71.6
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.1e-20 104.0 71 71.8
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.1e-20 104.0 68 67.6
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 3.1e-20 104.0 68 67.6
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.1e-20 102.4 71 70.4
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.1e-20 102.4 71 70.4
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.2e-19 102.1 81 60.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 1.2e-19 102.1 82 54.9
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.2e-19 102.1 81 56.8
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.6e-19 101.7 78 60.3
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.0e-19 101.3 80 60.0
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.7e-19 100.9 111 46.8
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 3.5e-19 100.5 61 70.5
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.5e-19 100.1 82 57.3
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 4.5e-19 100.1 79 63.3
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.5e-19 100.1 67 64.2
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 5.9e-19 99.8 81 59.3
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 5.9e-19 99.8 84 57.1
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 5.9e-19 99.8 80 58.8
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.3e-18 98.6 79 53.2
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.3e-18 98.6 67 67.2
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 2.9e-18 97.4 79 58.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 2.9e-18 97.4 68 66.2
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 3.8e-18 97.1 82 56.1
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 3.8e-18 97.1 79 55.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 6.6e-18 96.3 81 54.3
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.6e-18 96.3 79 59.5
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.5e-17 95.1 68 66.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.5e-17 95.1 68 66.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 67.6
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 1.9e-17 94.7 68 67.6
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.9e-17 94.7 71 66.2
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 3.3e-17 94.0 67 67.2
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 4.2e-17 93.6 68 64.7
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.5e-17 93.2 71 62.0
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.5e-17 93.2 68 66.2
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.5e-17 93.2 81 59.3
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 7.2e-17 92.8 83 49.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.5e-17 92.4 71 64.8
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.2e-16 92.0 73 60.3
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.1e-16 91.3 79 54.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 2.1e-16 91.3 77 54.5
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 3.6e-16 90.5 55 80.0
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.0e-16 89.4 67 64.2
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.4e-15 88.6 68 61.8
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.4e-15 88.6 79 53.2
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.8e-15 88.2 67 62.7
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 1.8e-15 88.2 71 57.7
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 3.0e-15 87.4 48 87.5
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 5.2e-15 86.7 71 56.3
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 6.8e-15 86.3 82 47.6
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.4e-14 83.6 73 53.4
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.8e-14 82.4 78 47.4
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.8e-13 80.9 78 48.7
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.8e-13 80.9 79 50.6
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 3.7e-13 80.5 72 52.8
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 6.3e-13 79.7 80 46.2
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 8.3e-13 79.3 47 78.7
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 1.1e-12 79.0 52 76.9
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.8e-12 78.2 74 50.0
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.8e-12 78.2 74 50.0
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 2.4e-12 77.8 78 48.7
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 9.2e-12 75.9 77 46.8
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.0e-11 74.7 74 47.3
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.0e-11 74.7 73 49.3
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.7e-11 74.3 76 47.4
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-11 73.6 54 61.1
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-11 73.6 54 61.1
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 4.5e-11 73.6 75 48.0
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 7.8e-11 72.8 69 50.7
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 7.8e-11 72.8 78 43.6
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 1.3e-10 72.0 72 48.6
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 2.3e-10 71.2 48 66.7
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.8e-10 70.5 70 47.1
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 3.8e-10 70.5 46 67.4
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 8.6e-10 69.3 48 64.6
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.1e-09 68.9 45 71.1
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 1.5e-09 68.6 39 82.1
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.3e-09 67.4 74 43.2
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 7.3e-09 66.2 48 62.5
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 2.1e-08 64.7 47 68.1
Lalb_Chr16g0388951 Lupinus albus HOM05D001514 ORTHO05D002956 1.8e-07 61.6 34 85.3
Migut.O00273 Erythranthe guttata HOM05D000001 ORTHO05D010923 2.3e-07 61.2 107 31.8
MELO3C004015.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.2e-07 60.1 54 53.7
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 8.9e-07 59.3 79 38.0
Nitab4.5_0007717g0030 Nicotiana tabacum HOM05D000535 ORTHO05D010923 1.2e-06 58.9 112 29.5
SGA_v2.0_scaffold25G10738 Striga asiatica HOM05D000001 ORTHO05D010923 1.2e-06 58.9 107 30.8
Aqoxy5G02826 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 2.0e-06 58.2 60 40.0
Nitab4.5_0001495g0080 Nicotiana tabacum HOM05D002084 ORTHO05D010923 2.0e-06 58.2 105 30.5
Peaxi162Scf00171g00130 Petunia axillaris HOM05D002084 ORTHO05D010923 7.5e-06 56.2 105 28.6


User provided reference genes

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