Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.2e-255 885.9 435 100.0
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 3.7e-220 768.1 435 86.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.7e-217 759.2 434 84.8
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 2.2e-217 758.8 435 85.1
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.5e-216 755.4 435 85.5
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.1e-215 752.3 435 84.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 5.7e-213 744.2 435 84.4
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 4.2e-208 728.0 435 82.1
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.9e-192 676.0 437 75.3
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.8e-190 669.5 437 75.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.7e-186 655.6 435 73.1
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 5.9e-186 654.4 430 73.5
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.1e-184 650.2 439 73.1
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.5e-184 649.8 438 73.7
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 8.0e-183 644.0 437 73.9
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.8e-182 642.9 438 72.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.3e-182 642.5 420 76.4
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.6e-181 639.0 439 72.9
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 4.9e-180 634.8 439 71.5
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 4.1e-179 631.7 426 71.4
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 422 73.2
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.6e-178 629.8 441 70.3
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 2.7e-178 629.0 481 66.1
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.5e-178 628.6 444 71.2
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.5e-178 628.6 444 71.2
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 3.5e-178 628.6 422 73.0
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.7e-177 626.3 437 70.9
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.9e-177 625.2 438 70.5
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 5.0e-177 624.8 436 70.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.5e-176 623.2 423 72.3
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.9e-176 622.9 438 69.2
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.3e-176 621.7 422 71.8
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 9.5e-176 620.5 447 67.8
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 2.1e-175 619.4 469 67.2
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.8e-175 619.0 438 71.0
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 4.7e-175 618.2 421 73.2
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.7e-175 618.2 419 72.6
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 6.2e-175 617.8 435 69.4
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.8e-174 616.3 419 69.7
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.8e-174 616.3 430 68.4
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.1e-174 615.5 436 69.3
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 4.0e-174 615.1 432 70.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 8.9e-174 614.0 441 67.6
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 417 69.1
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.5e-173 613.2 435 71.7
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.6e-173 612.5 435 69.9
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.4e-173 612.1 435 68.0
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 9.8e-173 610.5 432 69.9
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.7e-172 609.8 419 69.9
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.2e-172 609.4 449 67.7
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.2e-172 609.4 438 67.8
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 3.7e-172 608.6 432 70.4
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.7e-172 608.6 433 67.2
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 3.7e-172 608.6 436 67.0
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.9e-172 608.2 438 68.9
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 4.9e-172 608.2 435 71.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 8.3e-172 607.4 435 68.3
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-171 607.1 432 70.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.9e-171 606.3 436 67.2
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 3.2e-171 605.5 439 66.3
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 4.1e-171 605.1 433 68.4
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.0e-171 604.4 435 67.4
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 9.2e-171 604.0 436 66.7
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.2e-170 603.6 447 66.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.2e-170 603.6 433 67.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 6.0e-170 601.3 426 68.3
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.0e-169 600.5 421 68.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.7e-169 599.7 444 66.4
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 8.6e-169 597.4 444 66.2
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.1e-168 597.0 406 73.2
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.5e-168 596.7 436 66.7
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.1e-167 592.8 424 68.6
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 4.7e-167 591.7 445 65.4
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 8.1e-167 590.9 438 68.3
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 4.0e-166 588.6 481 63.0
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 2.6e-165 585.9 424 68.9
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.9e-164 581.6 438 66.4
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.4e-163 579.3 417 70.0
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 3.2e-163 578.9 438 66.4
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.2e-163 578.9 398 69.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.1e-163 577.8 502 59.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.3e-161 572.8 432 63.9
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 1.2e-157 560.5 331 82.5
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.5e-157 560.1 333 81.7
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 2.4e-155 552.7 457 60.6
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.2e-155 552.4 435 63.4
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.0e-153 547.4 407 68.1
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 6.6e-153 544.7 380 68.7
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 7.3e-152 541.2 411 66.7
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.8e-151 539.3 423 65.5
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-150 536.6 340 77.9
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 9.9e-149 530.8 334 77.5
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.4e-142 509.6 390 62.8
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.8e-137 493.4 425 59.3
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.3e-135 487.3 371 63.9
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 8.1e-135 484.6 410 61.0
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.1e-134 484.2 339 71.4
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.8e-134 483.4 364 64.6
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.8e-134 483.4 367 63.2
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 3.9e-129 465.7 415 55.7
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 6.7e-129 464.9 349 67.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.3e-128 462.6 420 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.0e-125 453.4 424 55.7
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 6.7e-121 438.3 413 53.8
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.3e-119 434.1 327 63.9
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.8e-118 430.3 450 51.8
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.0e-117 426.8 409 54.3
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 8.8e-113 411.4 313 63.9
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-112 410.6 435 53.6
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.5e-112 409.8 420 56.0
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.6e-106 390.6 330 61.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.0e-105 387.9 582 37.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.7e-100 370.5 287 64.8
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.6e-98 362.8 376 54.5
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-95 354.4 270 64.8
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 7.7e-93 345.1 280 62.5
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.9e-91 340.5 270 61.1
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.9e-85 318.9 252 65.1
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 9.4e-83 311.6 202 70.8
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.1e-82 310.5 231 68.4
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.0e-81 306.6 438 42.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 8.8e-81 305.1 352 48.6
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.0e-80 303.9 435 40.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 4.1e-78 296.2 419 41.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 9.8e-72 275.0 402 42.3
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.1e-70 271.6 151 84.8
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.4e-70 270.4 361 43.8
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 7.8e-69 265.4 223 59.6
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.6e-66 257.7 152 80.3
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.8e-65 254.2 233 53.2
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.8e-65 254.2 150 78.7
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 4.4e-64 249.6 469 35.2
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.1e-59 235.0 148 74.3
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.9e-59 234.2 416 38.0
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 4.4e-56 223.0 436 34.2
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.4e-54 217.2 256 50.4
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.2e-53 214.9 183 60.7
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.1e-52 209.5 144 67.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.5e-51 205.3 148 70.9
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.5e-48 198.0 137 67.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 6.4e-47 192.6 117 78.6
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 9.9e-40 168.7 111 73.0
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 2.4e-33 147.5 135 63.0
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-31 140.6 90 73.3
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.9e-31 140.6 90 73.3
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 8.1e-26 122.5 79 68.4
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 2.6e-24 117.5 431 26.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.7e-21 107.5 61 83.6
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-17 94.7 105 51.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 2.5e-14 84.3 343 27.7
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 3.5e-13 80.5 44 70.5
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 6.0e-13 79.7 61 55.7
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-10 69.3 53 62.3
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-09 68.9 50 68.0
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 5.3e-09 66.6 85 38.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.0e-08 64.7 65 46.2
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 7.6e-08 62.8 71 43.7
SHI43370 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-06 58.2 83 43.4


User provided reference genes

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