Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.7e-65 251.9 130 100.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.4e-52 208.0 127 81.1
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.2e-51 205.7 127 81.9
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.2e-51 205.7 127 81.9
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.7e-51 204.9 127 80.3
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.3e-51 204.1 123 82.9
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.1e-50 203.4 127 81.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 5.4e-50 201.1 127 81.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 5.4e-50 201.1 128 80.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 7.0e-50 200.7 130 80.8
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 9.2e-50 200.3 130 80.0
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.2e-49 199.9 127 78.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.2e-49 199.9 128 80.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.6e-49 199.5 120 83.3
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-49 199.1 130 80.0
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.0e-49 199.1 126 78.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.0e-49 199.1 126 78.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.7e-49 198.7 128 79.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.7e-49 198.7 123 80.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.7e-49 198.7 124 80.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.7e-49 198.7 128 78.1
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 127 79.5
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 125 80.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.5e-49 198.0 127 78.7
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.5e-49 198.0 127 78.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.9e-49 197.6 127 78.7
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 7.8e-49 197.2 126 77.8
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.0e-48 196.8 120 80.8
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.0e-48 196.8 123 79.7
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 81.0
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 80.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.7e-48 196.1 128 78.9
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.7e-48 196.1 120 81.7
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.3e-48 195.7 123 78.9
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 2.9e-48 195.3 128 78.1
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.9e-48 195.3 128 75.8
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 3.9e-48 194.9 127 78.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.9e-48 194.9 121 80.2
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.9e-48 194.9 123 81.3
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.9e-48 194.9 117 82.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.0e-48 194.5 122 78.7
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 6.6e-48 194.1 122 78.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.6e-48 194.1 122 77.9
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 6.6e-48 194.1 123 78.0
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.5e-47 192.2 130 76.9
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.5e-47 192.2 130 76.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.5e-47 192.2 121 79.3
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.5e-47 192.2 126 77.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.3e-47 191.8 127 76.4
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.3e-47 191.8 121 79.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.3e-47 191.4 126 76.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 4.3e-47 191.4 126 78.6
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 5.6e-47 191.0 124 75.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 5.6e-47 191.0 130 76.9
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.6e-47 191.0 127 75.6
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 7.3e-47 190.7 120 79.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 9.5e-47 190.3 122 77.9
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.2e-46 189.9 116 80.2
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.6e-46 189.5 117 79.5
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.6e-46 189.5 123 74.0
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 2.8e-46 188.7 121 76.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.8e-46 188.7 125 76.8
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.8e-46 188.7 128 73.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.8e-46 188.7 123 74.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 117 81.2
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.7e-46 188.0 122 77.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 8.0e-46 187.2 123 74.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.0e-45 186.8 122 75.4
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.0e-45 186.8 123 73.2
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.8e-45 186.0 116 78.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.3e-45 185.7 119 74.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-45 185.7 119 74.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-45 185.7 119 74.8
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.3e-45 185.7 128 75.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 3.1e-45 185.3 119 73.9
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 3.1e-45 185.3 119 73.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 5.2e-45 184.5 127 75.6
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 6.8e-45 184.1 129 70.5
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 8.9e-45 183.7 126 75.4
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-44 182.6 119 73.1
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.0e-44 182.6 120 75.8
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.0e-44 182.6 120 74.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.6e-44 182.2 120 74.2
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 4.4e-44 181.4 110 81.8
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 5.8e-44 181.0 116 75.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.8e-44 180.3 127 72.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.7e-43 179.5 131 67.2
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.2e-43 179.1 116 73.3
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.2e-43 179.1 116 73.3
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.2e-43 179.1 118 75.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.7e-43 178.3 118 74.6
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 4.9e-43 177.9 114 75.4
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.1e-42 174.9 105 82.9
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 5.4e-42 174.5 117 69.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 5.4e-42 174.5 117 69.2
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.4e-42 174.5 128 71.1
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 7.0e-42 174.1 121 70.2
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.2e-41 173.3 108 80.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.0e-41 172.6 124 73.4
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 3.5e-41 171.8 111 75.7
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 4.6e-41 171.4 117 68.4
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.7e-40 169.5 118 71.2
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 3.0e-40 168.7 119 73.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.1e-39 166.8 120 70.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.9e-39 166.0 119 72.3
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 5.6e-39 164.5 123 65.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.2e-38 163.3 110 75.5
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.8e-38 162.2 104 74.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.7e-38 161.4 98 83.7
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.2e-38 161.0 117 70.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-37 160.2 123 70.7
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.2e-37 157.9 120 67.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 5.2e-37 157.9 98 80.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.2e-36 156.8 98 78.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-36 156.4 99 80.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.0e-36 156.0 113 72.6
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.0e-36 156.0 120 68.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.6e-36 155.6 115 69.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.6e-36 155.6 129 64.3
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 7.5e-36 154.1 120 65.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.3e-35 150.6 90 81.1
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.4e-34 149.8 102 71.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.0e-34 147.5 101 75.2
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.8e-33 144.1 123 60.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-32 143.7 98 71.4
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.0e-32 143.7 98 71.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.3e-32 142.5 96 74.0
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.2e-30 136.7 88 75.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.1e-30 136.0 107 62.6
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.8e-30 135.6 109 67.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-29 133.3 118 55.1
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.8e-29 132.9 85 71.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.3e-29 132.5 86 75.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.0e-28 129.4 127 57.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.4e-28 128.3 113 58.4
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.2e-27 125.9 80 77.5
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.9e-27 125.6 128 56.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 6.4e-27 124.4 96 61.5
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 6.4e-27 124.4 112 54.5
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-26 123.6 114 51.8
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.2e-26 122.1 111 53.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.1e-25 119.4 84 73.8
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.7e-25 119.0 123 48.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.7e-25 119.0 114 56.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 6.0e-25 117.9 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 3.0e-24 115.5 117 48.7
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.1e-24 114.8 124 49.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.3e-23 112.1 102 54.9
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.6e-22 108.6 117 49.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 8.1e-22 107.5 128 44.5
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.4e-21 106.7 119 47.9
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.5e-20 103.2 76 76.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.9e-18 96.3 61 77.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 6.0e-17 91.3 63 68.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.6e-09 66.6 53 54.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.0e-08 63.9 69 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.3e-07 58.9 35 77.1
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 8.1e-06 54.3 110 32.7


User provided reference genes

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