Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0002971 Lupinus albus HOM05D008520 ORTHO05D009890 1.5e-30 135.6 69 100.0
arahy.Tifrunner.gnm1.ann1.4L7A6H Arachis hypogaea HOM05D008520 ORTHO05D009890 1.9e-14 82.0 75 64.0
arahy.Tifrunner.gnm1.ann1.H0FE8D Arachis hypogaea HOM05D008520 ORTHO05D009890 1.9e-14 82.0 75 64.0
Lj3g0002198 Lotus japonicus HOM05D008520 ORTHO05D009890 2.5e-14 81.6 76 64.5
Glyma.11G123300 Glycine max HOM05D008520 ORTHO05D009890 2.1e-13 78.6 74 62.2
Phvul.011G050000 Phaseolus vulgaris HOM05D008520 ORTHO05D009890 6.2e-13 77.0 73 60.3
Glyma.12G048000 Glycine max HOM05D008520 ORTHO05D009890 2.6e-11 71.6 79 58.2
Medtr4g068560 Medicago truncatula HOM05D008520 ORTHO05D009890 3.4e-11 71.2 79 55.7
Medtr1g034290 Medicago truncatula HOM05D008520 ORTHO05D009890 4.9e-10 67.4 73 54.8
Potri.004G148200 Populus trichocarpa HOM05D008520 ORTHO05D009890 8.4e-10 66.6 67 55.2
Atru.chr5.2897 Acer truncatum HOM05D008520 ORTHO05D009890 1.1e-09 66.2 74 50.0
Thecc.02G029000 Theobroma cacao HOM05D008520 ORTHO05D009890 1.1e-09 66.2 71 52.1
Ciclev10029756m.g Citrus clementina HOM05D008520 ORTHO05D009890 1.9e-09 65.5 69 49.3
CARHR106280 Cardamine hirsuta HOM05D011423 ORTHO05D009890 7.1e-09 63.5 78 46.2
Haze_02458 Corylus avellana HOM05D008520 ORTHO05D009890 7.1e-09 63.5 74 50.0
Prupe.8G111600 Prunus persica HOM05D008520 ORTHO05D009890 7.1e-09 63.5 84 48.8
Prupe.8G112200 Prunus persica HOM05D008520 ORTHO05D009890 7.1e-09 63.5 84 48.8
AL3G47790 Arabidopsis lyrata HOM05D011423 ORTHO05D009890 9.3e-09 63.2 77 45.5
Carub.0003s2983 Capsella rubella HOM05D011423 ORTHO05D009890 9.3e-09 63.2 77 42.9
Glyma.07G163300 Glycine max HOM05D008520 ORTHO05D009890 1.6e-08 62.4 75 56.0
Ciclev10029754m.g Citrus clementina HOM05D008520 ORTHO05D009890 4.6e-08 60.8 67 47.8
COL.COLO4_17779 Corchorus olitorius HOM05D008520 ORTHO05D009890 4.6e-08 60.8 75 52.0
Eucgr.G00506 Eucalyptus grandis HOM05D012043 ORTHO05D009890 4.6e-08 60.8 76 50.0
TPR.G10234 Trifolium pratense HOM05D011423 ORTHO05D009890 4.6e-08 60.8 76 48.7
Potri.009G109300 Populus trichocarpa HOM05D008520 ORTHO05D009890 6.0e-08 60.5 70 50.0
Cfa004952 Carpinus fangiana HOM05D008520 ORTHO05D009890 7.9e-08 60.1 72 48.6
Gohir.A01G181700 Gossypium hirsutum HOM05D008520 ORTHO05D009890 7.9e-08 60.1 77 51.9
Medtr1g034270 Medicago truncatula HOM05D008520 ORTHO05D009890 7.9e-08 60.1 68 51.5
Gohir.D01G172800 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.0e-07 59.7 77 51.9
Gorai.002G214400 Gossypium raimondii HOM05D008520 ORTHO05D009890 1.0e-07 59.7 77 51.9
CSS0029741 Camellia sinensis var. sinensis HOM05D008520 ORTHO05D009890 1.3e-07 59.3 84 48.8
Sc18g0004830 Simmondsia chinensis HOM05D008520 ORTHO05D009890 1.3e-07 59.3 79 43.0
vmacro02158 Vaccinium macrocarpon HOM05D008520 ORTHO05D009890 1.3e-07 59.3 87 48.3
Haze_02459 Corylus avellana HOM05D008520 ORTHO05D009890 1.8e-07 58.9 73 49.3
Prupe.8G110900 Prunus persica HOM05D008520 ORTHO05D009890 1.8e-07 58.9 85 48.2
Sp3g29250 Schrenkiella parvula HOM05D011423 ORTHO05D009890 1.8e-07 58.9 77 41.6
AT2G15960 Arabidopsis thaliana HOM05D011423 ORTHO05D009890 2.3e-07 58.5 78 38.5
Ca_12478_v3 Cicer arietinum L. HOM05D008520 ORTHO05D009890 2.3e-07 58.5 71 47.9
A03p45660 Brassica napus HOM05D011423 ORTHO05D009890 3.0e-07 58.2 74 45.9
BraA03t13698Z Brassica rapa HOM05D011423 ORTHO05D009890 3.0e-07 58.2 74 45.9
Eucgr.G01536 Eucalyptus grandis HOM05D012043 ORTHO05D009890 3.0e-07 58.2 76 46.1
Lj2g0022497 Lotus japonicus HOM05D008520 ORTHO05D009890 3.0e-07 58.2 69 55.1
Thhalv10022948m.g Eutrema salsugineum HOM05D011423 ORTHO05D009890 3.9e-07 57.8 77 40.3
Glyma.20G008300 Glycine max HOM05D008520 ORTHO05D009890 3.9e-07 57.8 72 54.2
Manes.17G096900 Manihot esculenta HOM05D012043 ORTHO05D009890 3.9e-07 57.8 70 52.9
QL11p039275 Quercus lobata HOM05D008520 ORTHO05D009890 3.9e-07 57.8 70 45.7
Sabra04G0098300 Salix brachista HOM05D012043 ORTHO05D009890 5.1e-07 57.4 65 55.4
Prupe.8G112000 Prunus persica HOM05D008520 ORTHO05D009890 1.1e-06 56.2 85 45.9
Gohir.D02G235600 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.5e-06 55.8 67 43.3
Gorai.005G263700 Gossypium raimondii HOM05D008520 ORTHO05D009890 1.5e-06 55.8 67 43.3
Medtr4g068453 Medicago truncatula HOM05D008520 ORTHO05D009890 1.5e-06 55.8 76 47.4
Atru.chr5.2895 Acer truncatum HOM05D008520 ORTHO05D009890 1.9e-06 55.5 75 42.7
C03p56720 Brassica napus HOM05D011423 ORTHO05D009890 1.9e-06 55.5 76 44.7
BolC3t17956H Brassica oleracea HOM05D011423 ORTHO05D009890 1.9e-06 55.5 76 44.7
Prupe.8G111400 Prunus persica HOM05D008520 ORTHO05D009890 1.9e-06 55.5 85 47.1
FAN24G0814 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.5e-06 55.1 93 43.0
FAN05G4777 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.3e-06 54.7 92 41.3
FAN15G0381 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.3e-06 54.7 92 41.3
FAN20G0555 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.3e-06 54.7 92 41.3
Manes.15G145900 Manihot esculenta HOM05D008520 ORTHO05D009890 4.3e-06 54.3 73 45.2
BcaB08g34619 Brassica carinata HOM05D011423 ORTHO05D009890 5.6e-06 53.9 75 45.3
RcHm_v2.0_Chr6g0260831 Rosa chinensis HOM05D008520 ORTHO05D009890 5.6e-06 53.9 91 40.7
Prupe.8G111800 Prunus persica HOM05D008520 ORTHO05D009890 7.4e-06 53.5 84 48.8


User provided reference genes

Program Settings