Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 0.0e+00 1121.7 546 100.0
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.0e-271 938.7 548 82.7
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 6.0e-268 927.2 548 82.3
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.3e-267 926.0 585 77.4
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 5.8e-263 910.6 564 78.2
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 9.2e-261 903.3 548 80.7
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.7e-260 901.7 546 81.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.1e-253 879.8 561 77.9
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.4e-253 879.4 560 76.4
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 6.4e-246 854.0 563 75.0
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 4.6e-244 847.8 554 78.2
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 2.8e-233 812.0 559 72.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.9e-230 802.0 544 75.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 9.3e-221 770.4 565 68.1
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.5e-218 763.1 558 69.2
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.1e-216 756.9 555 67.0
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 1.2e-215 753.4 553 66.2
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.2e-214 749.2 565 66.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.4e-213 746.5 556 64.4
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 4.2e-213 745.0 576 64.6
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 5.5e-213 744.6 567 66.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 7.2e-213 744.2 559 64.2
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 9.3e-213 743.8 541 68.8
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.6e-212 741.5 557 65.2
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.9e-212 740.7 565 65.8
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.3e-211 740.0 574 65.3
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.9e-211 738.4 567 65.3
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 8.7e-211 737.3 568 63.9
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 3.3e-210 735.3 564 65.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.7e-209 731.9 560 64.5
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 4.1e-208 728.4 545 65.7
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.9e-207 724.5 584 63.4
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.0e-206 723.8 512 69.9
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 6.5e-206 721.1 555 62.5
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.5e-206 721.1 587 62.0
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 8.5e-206 720.7 554 64.1
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.5e-205 719.2 555 62.5
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.4e-205 717.2 555 62.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 7.9e-204 714.1 525 66.7
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.4e-203 713.4 554 65.5
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.8e-203 713.0 546 64.7
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.1e-202 710.3 558 64.0
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 4.8e-201 704.9 555 63.2
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.8e-200 703.0 555 61.4
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.4e-200 702.6 552 62.9
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.1e-200 702.2 577 61.2
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.1e-200 702.2 558 63.4
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 9.1e-200 700.7 559 63.1
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 2.0e-199 699.5 552 62.3
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 4.5e-199 698.4 561 61.3
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.5e-199 698.4 549 64.1
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.3e-198 696.8 545 63.3
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 2.2e-198 696.0 548 63.0
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 2.9e-198 695.7 544 62.9
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.3e-193 680.2 561 61.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.7e-193 679.9 554 61.7
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.8e-193 678.3 556 60.6
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 8.2e-193 677.6 553 61.5
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 2.4e-192 676.0 549 61.0
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 3.1e-192 675.6 511 65.9
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 5.3e-192 674.9 536 61.8
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 4.5e-191 671.8 567 59.4
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 7.7e-191 671.0 590 58.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.0e-190 670.6 545 60.9
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.3e-190 670.2 555 60.9
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 8.5e-190 667.5 554 61.2
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.2e-189 665.6 585 57.9
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 4.2e-189 665.2 582 57.4
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 4.7e-188 661.8 571 57.6
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.0e-188 661.0 568 57.9
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.8e-187 659.8 544 59.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 2.3e-187 659.4 526 62.2
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.3e-187 659.4 579 58.2
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.7e-185 653.3 614 55.2
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 6.3e-185 651.4 587 56.4
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.7e-183 646.0 553 58.6
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.7e-182 643.3 485 63.1
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.8e-182 642.1 553 58.2
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 8.5e-182 641.0 556 58.3
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 3.2e-181 639.0 542 58.3
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.7e-180 635.2 547 57.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.7e-180 635.2 544 59.6
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 8.0e-180 634.4 531 60.5
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.0e-179 632.5 490 65.1
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 4.0e-179 632.1 506 61.1
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.6e-178 629.4 615 54.0
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.1e-176 624.0 586 55.1
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.6e-175 620.2 549 57.4
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.4e-171 607.1 551 56.1
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 8.3e-169 597.8 482 59.1
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 8.6e-166 587.8 559 54.2
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.8e-159 564.7 453 64.5
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 5.6e-157 558.5 371 72.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 3.6e-156 555.8 441 63.5
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.7e-153 547.0 396 68.9
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 8.3e-153 544.7 537 54.2
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.1e-149 534.3 390 65.6
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 4.3e-149 532.3 573 51.1
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 5.6e-149 531.9 384 65.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.5e-146 523.9 344 71.2
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.9e-144 516.9 372 70.7
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.1e-143 513.5 435 58.6
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 3.9e-142 509.2 548 50.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 7.8e-135 485.0 345 66.7
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 9.6e-133 478.0 349 68.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.4e-131 473.4 547 50.3
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.4e-128 464.2 343 66.2
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 6.0e-127 458.8 472 51.3
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 1.3e-126 457.6 447 49.4
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.6e-119 434.1 403 55.3
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-115 421.0 325 63.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.1e-115 419.9 529 42.7
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.4e-112 410.2 321 62.3
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 9.6e-109 398.3 297 64.3
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.6e-108 397.5 297 64.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 6.2e-108 395.6 316 61.1
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.8e-107 394.0 319 60.2
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 7.6e-106 388.7 498 42.6
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-98 364.8 256 67.2
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 9.4e-88 328.6 245 68.2
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.8e-83 314.3 211 71.6
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.3e-83 312.8 255 62.0
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 9.7e-77 292.0 469 34.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.0e-74 284.3 208 61.5
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.9e-72 277.7 250 57.2
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.1e-63 246.1 235 54.9
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-58 231.5 161 67.7
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.3e-56 223.8 157 62.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.2e-55 221.9 145 71.7
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.5e-48 197.6 132 71.2
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 4.0e-38 163.7 169 56.8
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.4e-37 160.6 177 53.1
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-36 158.3 172 42.4
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.4e-35 155.2 89 83.1
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 5.4e-35 153.3 124 56.5
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 7.0e-35 152.9 176 51.7
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.5e-34 150.6 160 52.5
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 6.0e-34 149.8 202 46.0
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 2.8e-31 141.0 84 78.6
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.6e-29 134.4 152 44.1
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 2.6e-29 134.4 92 70.7
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 6.0e-26 123.2 133 50.4
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.1e-10 71.6 70 52.9
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.3e-08 63.2 112 41.1
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 1.6e-07 62.0 67 44.8


User provided reference genes

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