Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-161 570.1 284 100.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-161 570.1 284 100.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 9.6e-161 570.1 284 100.0
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 4.5e-158 561.2 284 98.6
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-148 528.9 280 94.3
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 8.7e-146 520.4 260 100.0
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.2e-141 505.8 267 94.4
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-138 496.5 260 95.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.7e-137 491.1 280 90.4
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 9.7e-137 490.3 259 94.2
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-135 486.9 280 87.5
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.1e-135 486.9 280 87.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 5.0e-133 478.0 280 88.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.6e-131 473.0 260 93.5
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 3.6e-131 471.9 280 87.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.1e-131 471.1 280 87.5
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.9e-131 470.7 267 91.0
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 7.9e-131 470.7 280 87.1
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 4.4e-129 464.9 280 85.7
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 2.2e-128 462.6 280 86.1
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 9.1e-127 457.2 284 85.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.5e-124 449.1 280 83.9
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.2e-124 448.4 259 86.9
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 4.2e-124 448.4 259 86.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.4e-124 447.2 280 83.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 6.1e-123 444.5 284 82.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.4e-122 443.4 260 87.7
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 4.0e-122 441.8 280 83.9
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 5.2e-122 441.4 274 83.9
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.3e-121 438.7 267 85.8
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.5e-121 437.6 265 87.2
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 4.8e-120 434.9 267 85.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-120 434.5 260 86.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.4e-119 432.6 271 84.9
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 4.1e-119 431.8 267 84.6
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 7.7e-118 427.6 280 82.1
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.9e-117 425.6 269 83.3
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.0e-117 424.9 264 85.6
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 5.0e-117 424.9 264 85.6
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 5.0e-117 424.9 264 85.6
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 5.0e-117 424.9 261 86.6
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 6.5e-117 424.5 269 83.6
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 8.5e-117 424.1 267 83.1
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.1e-116 423.7 267 84.6
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.2e-116 422.2 280 80.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.2e-116 421.8 264 85.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.2e-116 421.8 264 85.2
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.7e-115 419.1 260 86.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 8.0e-115 417.5 275 79.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.0e-114 415.2 259 84.2
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 4.5e-110 401.7 268 80.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 8.5e-109 397.5 213 92.5
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.4e-106 390.2 280 75.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.0e-106 388.7 271 78.2
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.0e-98 364.0 263 76.0
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.4e-98 363.6 213 89.2
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-97 360.5 274 71.9
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-97 359.8 267 72.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.0e-93 345.9 225 83.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.2e-90 335.1 265 71.7
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.7e-88 328.9 260 69.6
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.7e-88 328.9 260 69.6
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-85 320.1 280 64.3
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 3.1e-82 309.3 181 90.1
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.7e-80 302.4 182 86.8
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-75 287.3 202 76.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 4.7e-75 285.4 220 73.6
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.9e-69 265.8 235 66.0
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.1e-67 260.0 222 68.5
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 2.8e-67 259.6 156 87.8
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.5e-62 242.7 200 69.5
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-61 240.7 267 54.7
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.0e-61 239.6 271 53.5
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 8.1e-59 231.5 156 78.8
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 4.0e-58 229.2 174 74.1
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.3e-56 224.2 142 83.8
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.0e-53 213.0 123 89.4
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.3e-51 207.6 142 79.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-46 189.5 131 79.4
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-42 177.9 106 86.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.4e-42 176.8 106 82.1
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 3.1e-42 176.4 107 85.0
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.0e-42 176.0 106 82.1
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-41 173.7 143 66.4
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 5.5e-39 165.6 101 81.2
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-37 161.4 101 81.2
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-37 160.2 152 59.2
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.8e-35 152.5 96 82.3
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-34 150.2 93 82.8
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 6.9e-34 148.7 121 66.9
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 9.0e-34 148.3 93 82.8
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 9.0e-34 148.3 79 87.3
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.1e-29 132.5 76 88.2
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 5.1e-29 132.5 76 88.2
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 5.1e-29 132.5 76 88.2
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 5.3e-26 122.5 65 92.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-21 107.1 75 73.3
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.0e-20 104.0 59 88.1
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-18 97.1 175 41.7
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.9e-16 90.1 66 66.7
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.2e-15 86.7 47 85.1
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 3.2e-15 86.7 69 72.5
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-14 84.7 83 57.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.7e-14 83.6 52 75.0
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 5.2e-13 79.3 80 57.5
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 6.7e-13 79.0 50 78.0
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 5.7e-12 75.9 55 74.5
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-11 74.7 67 61.2
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 1.7e-11 74.3 56 64.3
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 2.2e-11 73.9 45 77.8
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.8e-11 73.6 48 79.2
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 4.8e-11 72.8 169 34.9
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.8e-10 70.9 36 91.7
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 9.1e-10 68.6 83 53.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-08 62.4 34 79.4
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-08 62.4 34 79.4
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-08 62.4 34 79.4
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-07 59.7 45 62.2
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 2.1e-06 57.4 48 68.8


User provided reference genes

Program Settings