Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 6.9e-101 370.5 176 100.0
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.7e-44 182.6 207 45.9
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 5.6e-34 148.3 213 42.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 7.3e-34 147.9 184 48.4
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 7.3e-34 147.9 184 48.4
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 7.3e-34 147.9 184 48.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 9.5e-34 147.5 214 42.1
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-33 147.1 186 47.3
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 2.1e-33 146.4 184 48.4
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.1e-33 144.4 192 42.2
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 5.2e-32 141.7 182 42.9
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 2.0e-31 139.8 212 41.5
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-31 139.4 175 48.0
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.4e-31 139.0 212 41.0
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.4e-31 139.0 212 41.0
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.4e-31 139.0 212 41.0
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.4e-31 139.0 212 41.0
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.4e-31 139.0 212 41.0
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.4e-31 138.7 149 49.0
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 4.4e-31 138.7 174 46.6
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 5.8e-31 138.3 212 40.1
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.4e-29 132.9 159 48.4
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-29 132.5 210 39.0
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-29 132.5 232 39.2
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 4.1e-29 132.1 184 42.9
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.4e-29 131.7 212 39.2
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 9.2e-29 131.0 212 38.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.3e-27 127.1 206 38.8
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.3e-27 127.1 205 40.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.3e-27 127.1 222 37.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.7e-27 126.7 201 40.3
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.7e-27 126.7 190 41.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.1e-27 125.2 204 37.7
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 6.6e-27 124.8 194 41.8
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.1e-26 124.0 152 45.4
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.1e-26 124.0 152 45.4
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 2.5e-26 122.9 165 41.2
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 4.3e-26 122.1 189 41.8
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 5.6e-26 121.7 164 44.5
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 7.3e-26 121.3 176 42.6
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.6e-25 120.2 156 46.2
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.2e-25 118.2 156 45.5
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.2e-25 118.2 156 45.5
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.4e-24 117.1 126 46.8
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.2e-23 114.0 120 50.8
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 4.4e-23 112.1 152 42.1
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.7e-22 110.2 209 36.4
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.9e-22 109.4 181 38.1
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 1.4e-21 107.1 105 50.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.9e-21 106.7 128 45.3
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 4.2e-21 105.5 233 31.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.1e-20 103.2 174 42.0
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 6.0e-20 101.7 160 40.6
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 6.0e-20 101.7 145 42.8
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-19 100.9 132 43.9
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-19 100.5 133 45.9
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.3e-19 100.5 102 46.1
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.3e-19 100.5 163 39.3
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-19 100.1 130 41.5
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.7e-19 100.1 98 49.0
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-19 99.8 125 42.4
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-19 99.8 125 42.4
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.3e-19 99.8 125 42.4
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 8.7e-19 97.8 125 38.4
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 1.1e-18 97.4 186 37.6
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 1.1e-18 97.4 186 37.6
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 1.5e-18 97.1 96 47.9
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.9e-18 96.7 123 45.5
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 2.5e-18 96.3 81 58.0
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.3e-18 95.9 102 46.1
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 3.3e-18 95.9 186 37.1
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 4.3e-18 95.5 161 38.5
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 4.3e-18 95.5 161 38.5
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 4.3e-18 95.5 140 41.4
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.6e-18 95.1 98 48.0
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.6e-18 95.1 103 47.6
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.6e-18 95.1 119 43.7
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 7.3e-18 94.7 91 49.5
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-18 94.4 125 40.0
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 4.8e-17 92.0 61 62.3
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 6.2e-17 91.7 122 44.3
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 8.1e-17 91.3 69 62.3
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.1e-16 90.9 176 35.2
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.4e-15 85.9 136 38.2
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 3.4e-15 85.9 94 45.7
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.3e-14 84.0 73 56.2
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 1.7e-14 83.6 187 32.6
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 3.8e-14 82.4 89 50.6
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 6.4e-14 81.6 73 54.8
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 6.4e-14 81.6 73 54.8
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 6.4e-14 81.6 73 54.8
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.1e-13 80.9 89 43.8
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-13 80.1 114 42.1
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.9e-13 80.1 73 53.4
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 2.4e-13 79.7 104 38.5
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 3.2e-13 79.3 148 37.2
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 3.2e-13 79.3 101 41.6
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 9.3e-13 77.8 112 37.5
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 1.2e-12 77.4 82 52.4
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 3.5e-12 75.9 74 54.1
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.5e-12 75.9 91 42.9
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 7.9e-12 74.7 51 62.7
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.8e-11 73.6 129 34.9
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.8e-11 73.6 129 34.9
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 2.3e-11 73.2 90 44.4
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 2.3e-11 73.2 66 59.1
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-11 72.8 119 38.7
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 6.7e-11 71.6 173 28.9
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.7e-11 71.6 146 35.6
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.7e-11 71.2 66 53.0
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 1.5e-10 70.5 123 39.0
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 2.5e-10 69.7 42 66.7
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 2.5e-10 69.7 78 48.7
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 3.3e-10 69.3 91 41.8
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.3e-10 69.3 75 49.3
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 4.3e-10 68.9 76 50.0
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 5.6e-10 68.6 181 29.3
Glyma.17G185300 Glycine max HOM05D002660 ORTHO05D003902 7.4e-10 68.2 84 44.0
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 7.4e-10 68.2 83 43.4
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.3e-09 67.4 125 36.8
Rhsim06G0107900 Rhododendron simsii HOM05D002660 ORTHO05D003902 1.3e-09 67.4 55 54.5
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.1e-09 66.6 99 42.4
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 2.1e-09 66.6 87 37.9
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.8e-09 66.2 51 52.9
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.8e-09 66.2 79 43.0
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 3.7e-09 65.9 79 45.6
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.8e-09 65.5 108 38.0
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.8e-09 65.5 108 38.0
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 6.2e-09 65.1 72 48.6
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 5.3e-08 62.0 96 40.6
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 6.9e-08 61.6 104 37.5
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 6.9e-08 61.6 104 37.5
MBI05_g43410_MAGBIO Magnolia biondii HOM05D021484 ORTHO05D022418 9.0e-08 61.2 114 36.8
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 9.0e-08 61.2 45 57.8
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 9.0e-08 61.2 112 38.4
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 9.0e-08 61.2 48 68.8
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 9.0e-08 61.2 42 61.9
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.5e-07 60.5 37 67.6
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-07 60.5 69 47.8
SGA_v2.0_scaffold255G45343 Striga asiatica HOM05D000003 ORTHO05D000006 2.0e-07 60.1 74 45.9
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 2.0e-07 60.1 42 69.0
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-07 59.7 51 58.8
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-07 59.7 51 58.8
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-07 59.7 51 58.8
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-07 59.7 51 58.8
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 2.6e-07 59.7 50 60.0
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.6e-07 59.7 59 47.5
Lj2P1229T103 Lonicera japonica HOM05D002660 ORTHO05D003902 3.4e-07 59.3 42 64.3
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 4.5e-07 58.9 104 34.6
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.5e-07 58.9 72 44.4
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 4.5e-07 58.9 40 65.0
Lalb_Chr00c24g0406811 Lupinus albus HOM05D002660 ORTHO05D003902 5.8e-07 58.5 46 60.9
VMungo1215G2420 Vigna mungo HOM05D012916 ORTHO05D014365 5.8e-07 58.5 41 56.1
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 7.6e-07 58.2 40 72.5
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 9.9e-07 57.8 109 36.7
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.9e-07 57.8 99 38.4
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 9.9e-07 57.8 84 35.7
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-06 57.4 51 56.9
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.3e-06 57.4 59 45.8
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.3e-06 57.4 45 55.6
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 2.2e-06 56.6 37 67.6
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 2.2e-06 56.6 74 43.2
Lsat_1_v5_gn_2_61441 Lactuca sativa HOM05D002660 ORTHO05D003902 3.8e-06 55.8 44 50.0
Nitab4.5_0000866g0220 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.8e-06 55.8 89 38.2
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.9e-06 55.5 120 29.2
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 8.4e-06 54.7 120 30.0
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.4e-06 54.7 72 47.2


User provided reference genes

Program Settings