Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-261 904.8 445 100.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.7e-228 795.8 422 93.8
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.1e-227 793.1 445 89.2
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.1e-224 783.1 645 65.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.4e-222 776.2 446 89.2
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-221 772.7 464 85.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 7.6e-221 770.4 444 89.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.1e-219 766.5 449 87.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.2e-219 765.0 448 87.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.1e-218 762.3 448 87.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.3e-217 758.8 448 87.3
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.3e-217 758.8 448 87.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.4e-216 753.8 445 85.6
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.1e-208 729.9 500 76.4
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.9e-208 729.2 380 94.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 3.3e-208 728.4 479 80.0
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-207 726.5 604 65.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 8.4e-204 713.8 544 70.2
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 9.0e-198 693.7 451 79.6
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.9e-196 688.7 456 79.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.2e-195 685.3 545 68.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.1e-193 677.9 604 62.7
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.2e-191 672.5 580 64.8
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.5e-184 649.8 365 89.3
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-180 636.7 451 74.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.5e-173 611.7 480 68.8
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-170 603.6 560 60.4
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.0e-169 600.5 465 69.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-169 599.7 472 69.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.3e-167 591.3 464 68.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.1e-166 588.6 613 55.5
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-161 573.2 445 70.1
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-145 520.4 260 100.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-145 520.4 260 100.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.4e-145 520.4 260 100.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 6.8e-145 518.1 447 64.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 6.4e-143 511.5 260 98.5
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.9e-131 473.4 247 95.5
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.2e-129 465.3 388 66.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 8.3e-127 458.0 239 95.4
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 9.2e-126 454.5 260 88.1
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 9.2e-126 454.5 260 88.1
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 4.3e-123 445.7 260 88.8
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.8e-121 438.3 247 91.9
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.8e-121 438.3 260 87.7
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.3e-119 434.1 260 86.5
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.9e-118 430.3 260 86.5
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 9.2e-118 427.9 497 52.5
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 7.8e-117 424.9 264 85.6
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.6e-114 416.0 239 87.4
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.6e-114 416.0 239 87.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.9e-113 411.8 260 83.1
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.2e-110 402.9 247 85.4
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 4.2e-110 402.5 218 89.0
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 4.2e-110 402.5 218 89.0
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 4.2e-110 402.5 260 82.3
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-110 402.1 240 87.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.7e-109 399.8 247 85.0
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 7.8e-109 398.3 234 83.3
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-108 397.9 581 46.5
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 5.1e-108 395.6 249 84.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 6.6e-108 395.2 260 82.3
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 9.6e-107 391.3 247 85.0
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 1.6e-106 390.6 188 99.5
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 1.6e-106 390.6 188 99.5
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 1.6e-106 390.6 188 99.5
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 3.9e-100 369.4 248 80.6
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 368.6 188 93.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 368.6 188 93.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 368.6 188 93.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 7.4e-99 365.2 193 93.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 6.2e-98 362.1 187 92.5
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-97 360.9 187 93.0
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 3.1e-97 359.8 260 75.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.6e-96 356.7 251 78.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.6e-96 356.7 187 91.4
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.9e-95 353.2 200 85.0
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.8e-95 352.8 187 90.9
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 7.4e-91 338.6 187 87.2
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 6.9e-89 332.0 243 75.7
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.2e-88 331.3 193 90.2
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-88 330.9 260 70.4
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-87 327.4 247 72.1
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-86 323.9 173 90.2
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.7e-85 320.1 193 81.9
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.7e-85 320.1 193 81.9
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.8e-84 317.4 205 83.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 1.5e-83 314.3 167 89.8
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.2e-82 310.5 187 82.9
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 4.8e-82 309.3 181 90.1
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 5.3e-81 305.8 187 81.3
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-77 294.7 146 94.5
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-77 294.7 146 94.5
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.1e-77 293.9 164 86.6
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 3.9e-76 289.7 163 86.5
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-75 287.3 202 76.2
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 6.1e-69 265.8 235 66.0
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 5.1e-68 262.7 148 85.1
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 4.4e-67 259.6 156 87.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-66 258.1 188 70.2
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 3.1e-65 253.4 137 86.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 7.4e-59 232.3 130 86.9
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 4.8e-58 229.6 146 79.5
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 6.3e-58 229.2 174 74.1
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 6.5e-55 219.2 111 93.7
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.9e-54 217.6 247 54.3
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.2e-53 214.9 199 61.8
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.2e-53 214.9 199 61.8
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.1e-53 212.6 113 85.0
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-50 203.4 111 85.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 7.0e-49 199.1 136 78.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.1e-46 191.8 122 84.4
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.4e-44 184.9 181 54.7
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 7.5e-43 179.1 122 80.3
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-42 177.9 106 86.8
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 4.9e-42 176.4 107 85.0
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-42 176.0 176 57.4
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-41 173.7 143 66.4
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-37 160.2 152 59.2
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.7e-37 159.8 117 76.9
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 7.5e-35 152.5 96 82.3
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-34 150.2 93 82.8
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.4e-33 148.3 93 82.8
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-32 145.2 86 83.7
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-32 144.8 131 58.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-32 144.4 86 82.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.6e-31 139.0 81 84.0
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 4.3e-30 136.7 86 80.2
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.0e-29 132.5 76 88.2
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 8.0e-29 132.5 76 88.2
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 8.0e-29 132.5 76 88.2
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 3.1e-28 130.6 69 91.3
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-27 127.5 190 43.2
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 8.3e-26 122.5 65 92.3
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.1e-25 122.1 107 63.6
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 6.0e-24 116.3 59 89.8
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-23 115.2 110 57.3
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.1e-20 104.0 59 88.1
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.9e-18 97.4 53 83.0
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.7e-18 97.1 175 41.7
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 3.5e-16 90.5 43 100.0
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 4.6e-16 90.1 66 66.7
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 5.1e-15 86.7 69 72.5
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-14 84.7 63 68.3
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 5.6e-14 83.2 51 72.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 8.1e-13 79.3 80 57.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-12 79.0 55 74.5
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 8.9e-12 75.9 55 74.5
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 1.5e-11 75.1 68 58.8
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-11 74.7 67 61.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 3.4e-11 73.9 45 77.8
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 3.4e-11 73.9 53 64.2
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 4.4e-11 73.6 48 79.2
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 7.6e-11 72.8 169 34.9
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.9e-10 70.9 36 91.7
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 3.7e-10 70.5 48 72.9
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.4e-10 69.3 40 85.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 8.4e-10 69.3 162 32.1
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-09 68.6 83 53.0
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 7.1e-09 66.2 59 61.0
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 4.6e-08 63.5 32 87.5
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.6e-07 59.7 31 87.1
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 3.3e-06 57.4 48 68.8


User provided reference genes

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