Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.7e-73 278.5 133 100.0
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.1e-66 253.8 124 96.0
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.1e-53 211.8 109 92.7
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 5.3e-53 211.1 102 97.1
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 8.5e-51 203.8 121 76.0
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.6e-49 199.5 113 83.2
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 1.6e-49 199.5 113 83.2
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.7e-49 198.7 112 83.0
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 2.7e-49 198.7 112 84.8
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 7.9e-49 197.2 112 83.9
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.0e-48 196.8 135 73.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 1.8e-48 196.1 112 81.2
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.8e-48 196.1 147 69.4
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.3e-48 195.7 112 83.0
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.0e-48 195.3 112 82.1
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 5.1e-48 194.5 113 81.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.7e-48 194.1 113 79.6
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 6.7e-48 194.1 114 78.9
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.1e-47 193.4 113 79.6
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 1.5e-47 193.0 136 70.6
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 1.5e-47 193.0 136 70.6
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.0e-47 192.6 112 81.2
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 2.6e-47 192.2 113 81.4
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.6e-47 192.2 113 78.8
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 3.3e-47 191.8 148 68.2
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.3e-47 191.8 112 82.1
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 4.4e-47 191.4 113 80.5
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 5.7e-47 191.0 114 77.2
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.7e-47 191.0 114 77.2
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 5.7e-47 191.0 113 78.8
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 5.7e-47 191.0 113 79.6
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 7.4e-47 190.7 105 82.9
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 7.4e-47 190.7 114 77.2
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 9.7e-47 190.3 106 82.1
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 9.7e-47 190.3 113 79.6
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.3e-46 189.9 114 77.2
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.3e-46 189.9 114 76.3
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 2.2e-46 189.1 113 77.9
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 3.7e-46 188.3 113 79.6
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.7e-46 188.3 112 79.5
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 3.7e-46 188.3 113 78.8
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.7e-46 188.3 113 77.9
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 4.8e-46 188.0 113 77.9
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 6.3e-46 187.6 114 76.3
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 8.2e-46 187.2 106 80.2
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 8.2e-46 187.2 113 78.8
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 8.2e-46 187.2 113 78.8
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.1e-45 186.8 114 76.3
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.4e-45 186.4 127 70.9
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-45 186.4 113 77.0
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-45 186.4 114 76.3
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.4e-45 186.4 113 77.0
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.4e-45 186.4 113 77.0
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.4e-45 186.4 106 80.2
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.8e-45 186.0 106 77.4
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 1.8e-45 186.0 113 76.1
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 1.8e-45 186.0 113 76.1
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 2.4e-45 185.7 113 76.1
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.1e-45 185.3 114 75.4
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 5.3e-45 184.5 114 76.3
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 7.0e-45 184.1 136 69.9
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 9.1e-45 183.7 139 64.7
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.2e-44 183.3 105 80.0
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 1.5e-44 183.0 113 80.5
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.5e-44 183.0 113 74.3
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.5e-44 183.0 113 74.3
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.5e-44 183.0 113 75.2
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.5e-44 183.0 113 76.1
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 2.0e-44 182.6 113 76.1
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 2.6e-44 182.2 144 64.6
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 3.5e-44 181.8 113 77.9
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 3.5e-44 181.8 113 73.5
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 3.5e-44 181.8 113 75.2
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 3.5e-44 181.8 113 77.9
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 3.5e-44 181.8 113 77.9
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 4.5e-44 181.4 114 77.2
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 5.9e-44 181.0 114 76.3
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 5.9e-44 181.0 117 76.1
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 5.9e-44 181.0 111 80.2
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 5.9e-44 181.0 113 74.3
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 5.9e-44 181.0 113 74.3
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.0e-43 180.3 113 79.6
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.7e-43 179.5 113 74.3
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 1.7e-43 179.5 113 75.2
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.2e-43 179.1 113 77.0
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 2.2e-43 179.1 150 61.3
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 2.9e-43 178.7 144 63.2
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.9e-43 178.7 106 80.2
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.9e-43 178.7 143 64.3
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 3.8e-43 178.3 143 65.7
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 5.0e-43 177.9 148 62.8
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 5.0e-43 177.9 138 64.5
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 6.5e-43 177.6 115 78.3
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 6.5e-43 177.6 143 65.7
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 6.5e-43 177.6 143 66.4
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 1.1e-42 176.8 144 62.5
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.4e-42 176.4 141 63.8
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.4e-42 176.4 113 73.5
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.4e-42 176.4 113 76.1
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.4e-42 176.4 113 75.2
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.4e-42 176.4 113 75.2
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.4e-42 176.4 113 75.2
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 1.9e-42 176.0 142 65.5
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 3.2e-42 175.3 144 62.5
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 3.2e-42 175.3 145 62.1
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 9.4e-42 173.7 113 73.5
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 9.4e-42 173.7 113 73.5
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 1.6e-41 172.9 152 59.9
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.7e-41 172.2 106 78.3
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 3.6e-41 171.8 139 62.6
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 4.7e-41 171.4 144 61.1
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 1.4e-40 169.9 113 74.3
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.4e-40 169.9 145 60.0
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.8e-40 169.5 153 58.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.8e-40 169.5 113 74.3
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 3.9e-40 168.3 113 73.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.9e-40 168.3 113 73.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.9e-40 168.3 113 73.5
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 5.2e-40 167.9 113 71.7
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 5.2e-40 167.9 124 69.4
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 8.8e-40 167.2 143 60.1
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 8.8e-40 167.2 125 68.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.1e-39 166.8 134 64.9
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 1.5e-39 166.4 150 56.7
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.5e-39 166.4 106 68.9
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 1.5e-39 166.4 113 73.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 2.6e-39 165.6 114 68.4
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 2.6e-39 165.6 107 72.0
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.6e-39 165.6 114 68.4
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 2.6e-39 165.6 114 68.4
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 2.6e-39 165.6 114 68.4
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 3.3e-39 165.2 114 68.4
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 3.3e-39 165.2 113 73.5
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 4.4e-39 164.9 97 81.4
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 9.7e-39 163.7 135 63.7
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.3e-38 163.3 113 72.6
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.2e-38 162.5 113 69.9
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 3.7e-38 161.8 135 63.7
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 3.7e-38 161.8 135 63.7
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.1e-37 160.2 102 73.5
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 2.4e-37 159.1 135 61.5
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 2.4e-37 159.1 135 62.2
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 2.4e-37 159.1 130 65.4
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.3e-35 153.3 113 61.9
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 2.2e-35 152.5 113 67.3
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 1.5e-34 149.8 108 75.0
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 1.5e-34 149.8 106 70.8
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 5.5e-34 147.9 99 70.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 7.2e-34 147.5 104 67.3
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 2.1e-33 146.0 133 58.6
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.0e-32 142.1 90 78.9
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 1.5e-31 139.8 105 63.8
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 4.4e-31 138.3 88 77.3
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 7.5e-31 137.5 95 67.4
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 1.8e-29 132.9 114 60.5
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 5.3e-29 131.3 117 53.8
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.2e-28 130.2 89 74.2
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.0e-28 129.4 113 57.5
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 3.2e-26 122.1 135 50.4
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 4.2e-26 121.7 100 60.0
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.2e-25 120.2 88 62.5
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.2e-25 120.2 96 56.2
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.6e-25 119.8 91 65.9
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 2.1e-25 119.4 109 58.7
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 3.6e-25 118.6 88 72.7
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.3e-24 115.9 88 67.0
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.3e-22 110.2 93 62.4
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 2.2e-22 109.4 67 71.6
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 2.8e-22 109.0 88 64.8
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 1.4e-21 106.7 77 70.1
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 1.1e-18 97.1 91 54.9
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 7.2e-18 94.4 113 50.4
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.2e-17 93.6 50 78.0
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 2.8e-17 92.4 67 62.7
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.4e-16 90.1 111 48.6
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 1.3e-11 73.6 94 54.3
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 4.3e-10 68.6 139 34.5
MCO04G029 Micromonas commoda HOM05D003598 ORTHO05D004198 1.6e-09 66.6 57 52.6
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 1.4e-08 63.5 77 48.1
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.4e-07 58.5 41 75.6
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 9.8e-07 57.4 25 88.0
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.2e-06 56.2 25 88.0


User provided reference genes

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