Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund31260 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.4e-24 115.5 60 100.0
Hund31261 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.4e-24 115.5 60 100.0
Hund31269 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.4e-24 115.5 60 100.0
Hund31270 Selenicereus undatus HOM05D000278 ORTHO05D020839 1.4e-24 115.5 60 100.0
EL10Ac6g13920 Beta vulgaris HOM05D000278 ORTHO05D005056 6.4e-22 106.7 56 96.4
Ah.03g136640 Amaranthus hybridus HOM05D000278 ORTHO05D005056 1.1e-21 105.9 56 96.4
Ah.02g128680 Amaranthus hybridus HOM05D000278 ORTHO05D005056 1.4e-21 105.5 56 96.4
CSS0025739 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.4e-21 104.8 60 95.0
CSS0041160 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.4e-21 104.8 60 95.0
Cfa013785 Carpinus fangiana HOM05D000278 ORTHO05D005056 2.4e-21 104.8 58 91.4
Haze_22445 Corylus avellana HOM05D000278 ORTHO05D005056 2.4e-21 104.8 58 91.4
Dinv06562 Davidia involucrata HOM05D000278 ORTHO05D005056 4.1e-21 104.0 56 94.6
Actinidia33488 Actinidia chinensis HOM05D000278 ORTHO05D005056 7.0e-21 103.2 58 91.4
CiPaw.13G031000 Carya illinoinensis HOM05D000278 ORTHO05D005056 9.2e-21 102.8 56 94.6
Potri.014G058500 Populus trichocarpa HOM05D000278 ORTHO05D005056 9.2e-21 102.8 56 94.6
Sabra14G0042700 Salix brachista HOM05D000278 ORTHO05D005056 1.2e-20 102.4 56 92.9
DCAR_015863 Daucus carota HOM05D000278 ORTHO05D005056 1.6e-20 102.1 60 93.3
Rhsim01G0136000 Rhododendron simsii HOM05D000278 ORTHO05D005056 1.6e-20 102.1 56 94.6
SGA_v2.0_scaffold153G36956 Striga asiatica HOM05D000278 ORTHO05D005056 1.6e-20 102.1 56 92.9
TAR374G0041 Trochodendron aralioides HOM05D000278 ORTHO05D005056 1.6e-20 102.1 56 92.9
Actinidia12666 Actinidia chinensis HOM05D000278 ORTHO05D005056 2.0e-20 101.7 56 92.9
PGR004G1930 Punica granatum HOM05D000278 ORTHO05D005056 2.0e-20 101.7 56 91.1
TWI59G0197 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 2.0e-20 101.7 56 92.9
MSTRG.17153 Avicennia marina HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 91.1
CAN.G899.15 Capsicum annuum HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Lsat_1_v5_gn_4_22680 Lactuca sativa HOM05D000278 ORTHO05D005056 2.7e-20 101.3 60 91.7
Nitab4.5_0000706g0130 Nicotiana tabacum HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Nitab4.5_0006820g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Oeu064569.1 Olea europaea HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Solyc01g090750.3 Solanum lycopersicum HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Sopen01g036480 Solanum pennellii HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
PGSC0003DMG400026026 Solanum tuberosum HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
vmacro21041 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 2.7e-20 101.3 56 92.9
Manes.05G050400 Manihot esculenta HOM05D000278 ORTHO05D005056 3.5e-20 100.9 56 91.1
Potri.002G142700 Populus trichocarpa HOM05D000278 ORTHO05D005056 3.5e-20 100.9 56 92.9
GSVIVG01018213001 Vitis vinifera HOM05D000278 ORTHO05D005056 3.5e-20 100.9 56 92.9
AUR62017449 Chenopodium quinoa HOM05D000278 ORTHO05D005056 4.6e-20 100.5 56 89.3
AUR62032517 Chenopodium quinoa HOM05D000278 ORTHO05D005056 4.6e-20 100.5 56 89.3
Oeu000041.1 Olea europaea HOM05D000278 ORTHO05D005056 4.6e-20 100.5 56 92.9
THA.LOC104802476 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 4.6e-20 100.5 56 91.1
THA.LOC104817211 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 4.6e-20 100.5 56 91.1
Atru.chr5.215 Acer truncatum HOM05D000278 ORTHO05D005056 6.0e-20 100.1 60 90.0
CANSAT11G0994 Cannabis sativa HOM05D000278 ORTHO05D005056 6.0e-20 100.1 56 91.1
ECA234G2055 Erigeron canadensis HOM05D000278 ORTHO05D005056 6.0e-20 100.1 56 92.9
vmacro13458 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 6.0e-20 100.1 60 88.3
Atru.chr11.1568 Acer truncatum HOM05D000278 ORTHO05D005056 7.8e-20 99.8 60 90.0
Dinv28581 Davidia involucrata HOM05D000278 ORTHO05D005056 7.8e-20 99.8 56 91.1
Nn3g18503 Nelumbo nucifera HOM05D000278 ORTHO05D005056 7.8e-20 99.8 58 87.9
Peaxi162Scf00377g00416 Petunia axillaris HOM05D000278 ORTHO05D005056 7.8e-20 99.8 56 91.1
TAR636G0359 Trochodendron aralioides HOM05D000278 ORTHO05D005056 7.8e-20 99.8 56 91.1
Ciclev10019588m.g Citrus clementina HOM05D000278 ORTHO05D005056 1.0e-19 99.4 56 89.3
TWI14G0716 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 1.0e-19 99.4 56 91.1
COL.COLO4_31194 Corchorus olitorius HOM05D000278 ORTHO05D005056 1.3e-19 99.0 56 91.1
Duzib212G0780 Durio zibethinus HOM05D000278 ORTHO05D005056 1.3e-19 99.0 56 91.1
Eucgr.I00662 Eucalyptus grandis HOM05D000278 ORTHO05D005056 1.3e-19 99.0 56 91.1
Thhalv10020463m.g Eutrema salsugineum HOM05D000278 ORTHO05D005056 1.3e-19 99.0 56 91.1
HanXRQChr09g0251951 Helianthus annuus HOM05D000278 ORTHO05D005056 1.3e-19 99.0 60 90.0
HanXRQChr12g0383091 Helianthus annuus HOM05D000278 ORTHO05D005056 1.3e-19 99.0 60 90.0
MBI12_g29752_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D005056 1.3e-19 99.0 60 88.3
Nn4g24660 Nelumbo nucifera HOM05D000278 ORTHO05D005056 1.3e-19 99.0 58 87.9
unitig_0.g1316 Utricularia gibba HOM05D000278 ORTHO05D005056 1.3e-19 99.0 56 91.1
Cpa.g.sc477.1 Carica papaya HOM05D000278 ORTHO05D005056 1.7e-19 98.6 56 89.3
QL07p017267 Quercus lobata HOM05D000278 ORTHO05D005056 1.7e-19 98.6 56 91.1
SalBow5G3381 Salvia bowleyana HOM05D000278 ORTHO05D005056 1.7e-19 98.6 60 88.3
MSTRG.28169 Avicennia marina HOM05D000278 ORTHO05D005056 2.3e-19 98.2 60 86.7
Glyma.05G165500 Glycine max HOM05D000278 ORTHO05D005056 2.3e-19 98.2 56 89.3
Gohir.A10G145900 Gossypium hirsutum HOM05D000278 ORTHO05D005056 2.3e-19 98.2 56 89.3
Gohir.D10G121200 Gossypium hirsutum HOM05D000278 ORTHO05D005056 2.3e-19 98.2 56 89.3
Gorai.011G133200 Gossypium raimondii HOM05D000278 ORTHO05D005056 2.3e-19 98.2 56 89.3
Glyma.08G123100 Glycine max HOM05D000278 ORTHO05D005056 3.0e-19 97.8 56 87.5
QL04p035809 Quercus lobata HOM05D000278 ORTHO05D005056 3.0e-19 97.8 56 89.3
Migut.B01576 Erythranthe guttata HOM05D000278 ORTHO05D005056 3.9e-19 97.4 60 88.3
CDE04G3339 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 5.0e-19 97.1 55 89.1
CDE12G0415 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 5.0e-19 97.1 55 89.1
Duzib128G0144 Durio zibethinus HOM05D000278 ORTHO05D005056 5.0e-19 97.1 56 89.3
Phvul.002G245800 Phaseolus vulgaris HOM05D000278 ORTHO05D005056 5.0e-19 97.1 56 85.7
AL3G33730 Arabidopsis lyrata HOM05D000278 ORTHO05D005056 6.6e-19 96.7 56 87.5
AT3G20050 Arabidopsis thaliana HOM05D000278 ORTHO05D005056 6.6e-19 96.7 56 87.5
arahy.Tifrunner.gnm1.ann1.0EJ6SU Arachis hypogaea HOM05D000278 ORTHO05D005056 6.6e-19 96.7 60 85.0
arahy.Tifrunner.gnm1.ann1.W5WKZB Arachis hypogaea HOM05D000278 ORTHO05D005056 6.6e-19 96.7 60 85.0
Carub.0003s1997 Capsella rubella HOM05D000278 ORTHO05D005056 6.6e-19 96.7 56 87.5
CARHR095580 Cardamine hirsuta HOM05D000278 ORTHO05D005056 6.6e-19 96.7 56 87.5
MD06G1047900 Malus domestica HOM05D000278 ORTHO05D005056 6.6e-19 96.7 54 92.6
Sed0018244 Sechium edule HOM05D000278 ORTHO05D005056 6.6e-19 96.7 58 86.2
Aqoxy5G03860 Aquilegia oxysepala HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
BcaB04g19077 Brassica carinata HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
BcaC01g03587 Brassica carinata HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
A03p41540 Brassica napus HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
C03p50870 Brassica napus HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
BolC3t17371H Brassica oleracea HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
BraA03t13309Z Brassica rapa HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
Haze_02727 Corylus avellana HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 87.5
Hma1.2p1_0432F.1_g151820 Hydrangea macrophylla HOM05D000278 ORTHO05D005056 8.6e-19 96.3 54 90.7
VMungo0251G0924 Vigna mungo HOM05D000278 ORTHO05D005056 8.6e-19 96.3 56 85.7
Lalb_Chr13g0295521 Lupinus albus HOM05D000278 ORTHO05D005056 1.1e-18 95.9 56 85.7
Prupe.5G058100 Prunus persica HOM05D000278 ORTHO05D005056 1.1e-18 95.9 56 87.5
Ca_17857_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005056 1.5e-18 95.5 58 84.5
ClCG10G012080 Citrullus lanatus HOM05D000278 ORTHO05D005056 1.5e-18 95.5 56 85.7
Thecc.01G386100 Theobroma cacao HOM05D000278 ORTHO05D005056 1.5e-18 95.5 55 89.1
BcaB04g20669 Brassica carinata HOM05D000278 ORTHO05D005056 1.9e-18 95.1 56 85.7
ClCG11G009900 Citrullus lanatus HOM05D000278 ORTHO05D005056 1.9e-18 95.1 56 85.7
MELO3C008567.2 Cucumis melo HOM05D000278 ORTHO05D005056 1.9e-18 95.1 56 85.7
CsaV3_2G010520 Cucumis sativus L. HOM05D000278 ORTHO05D005056 1.9e-18 95.1 56 85.7
MD04G1052300 Malus domestica HOM05D000278 ORTHO05D005056 1.9e-18 95.1 54 90.7
Sp3g18080 Schrenkiella parvula HOM05D000278 ORTHO05D005056 1.9e-18 95.1 56 85.7
Sed0027734 Sechium edule HOM05D000278 ORTHO05D020839 1.9e-18 95.1 58 82.8
Os04g0551800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005056 3.3e-18 94.4 56 85.7
Psat7g065040 Pisum sativum HOM05D000278 ORTHO05D005056 3.3e-18 94.4 56 85.7
SEGI_28943 Sequoiadendron giganteum HOM05D000278 ORTHO05D005056 3.3e-18 94.4 56 83.9
Aa31LG8G6840 Aethionema arabicum HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BcaB06g26075 Brassica carinata HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BcaC05g28366 Brassica carinata HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BcaC05g28368 Brassica carinata HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BcaC09g48960 Brassica carinata HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
A01p34600 Brassica napus HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
A05p29050 Brassica napus HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
C01p44050 Brassica napus HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
C05p44480 Brassica napus HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BolC1t04366H Brassica oleracea HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BolC5t33171H Brassica oleracea HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BraA01t03554Z Brassica rapa HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
BraA05t21789Z Brassica rapa HOM05D000278 ORTHO05D005056 4.3e-18 94.0 56 83.9
Lsat_1_v5_gn_8_34780 Lactuca sativa HOM05D000278 ORTHO05D005056 4.3e-18 94.0 60 81.7
CSS0004862 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 5.6e-18 93.6 62 87.1
CSS0015664 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 5.6e-18 93.6 62 87.1
Lj4g0002579 Lotus japonicus HOM05D000278 ORTHO05D005056 7.3e-18 93.2 56 83.9
HPP92_003530 Vanilla planifolia HOM05D000278 ORTHO05D005056 7.3e-18 93.2 54 85.2
ATR0317G001 Amborella trichopoda HOM05D000278 ORTHO05D005056 9.5e-18 92.8 58 77.6
FvH4_5g20270 Fragaria vesca HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
FAN04G0133 Fragaria x ananassa HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
FAN08G1444 Fragaria x ananassa HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
FAN13G2296 Fragaria x ananassa HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
FAN18G4092 Fragaria x ananassa HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
RcHm_v2.0_Chr7g0205331 Rosa chinensis HOM05D000278 ORTHO05D005056 9.5e-18 92.8 55 83.6
Lalb_Chr07g0186011 Lupinus albus HOM05D000278 ORTHO05D020839 1.6e-17 92.0 56 80.4
PSO017G3652 Papaver somniferum HOM05D000278 ORTHO05D005056 1.6e-17 92.0 54 87.0
PSO170G4166 Papaver somniferum HOM05D000278 ORTHO05D005056 1.6e-17 92.0 52 90.4
PSO478G3336 Papaver somniferum HOM05D000278 ORTHO05D005056 1.6e-17 92.0 54 87.0
PSO700G0048 Papaver somniferum HOM05D000278 ORTHO05D005056 1.6e-17 92.0 52 90.4
Zm00001eb192630 Zea mays HOM05D000278 ORTHO05D005056 2.1e-17 91.7 56 82.1
Medtr8g088270 Medicago truncatula HOM05D000278 ORTHO05D005056 2.8e-17 91.3 55 85.5
Pp3c11_2110 Physcomitrium patens HOM05D000278 ORTHO05D005056 2.8e-17 91.3 59 79.7
CBR_g22255 Chara braunii HOM05D000278 ORTHO05D005056 3.6e-17 90.9 56 78.6
SMO353G0303 Selaginella moellendorffii HOM05D000278 ORTHO05D005056 3.6e-17 90.9 55 80.0
Mapoly0099s0028 Marchantia polymorpha HOM05D000278 ORTHO05D005056 4.7e-17 90.5 55 80.0
Zm00001eb257580 Zea mays HOM05D000278 ORTHO05D005056 6.2e-17 90.1 56 80.4
Pp3c7_24640 Physcomitrium patens HOM05D000278 ORTHO05D005056 8.1e-17 89.7 59 79.7
Pp3c1_900 Physcomitrium patens HOM05D000278 ORTHO05D005056 1.4e-16 89.0 51 84.3
Cre10.g439100 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D005056 4.4e-15 84.0 59 72.9
Haze_26105 Corylus avellana HOM05D000278 ORTHO05D005056 3.2e-13 77.8 59 64.4
PRCOL_00000179 Prasinoderma coloniale HOM05D000278 ORTHO05D005056 5.4e-13 77.0 53 69.8
MCO11G383 Micromonas commoda HOM05D000278 ORTHO05D005056 3.0e-11 71.2 53 64.2
unitig_61.g26416 Utricularia gibba HOM05D000278 ORTHO05D005056 5.8e-07 57.0 35 82.9
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 9.9e-07 56.2 30 93.3
Nn4g24662 Nelumbo nucifera HOM05D000278 ORTHO05D020839 1.7e-06 55.5 30 90.0


User provided reference genes

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