Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-288 994.2 493 100.0
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-279 964.1 510 95.1
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-277 958.0 493 97.4
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.9e-277 957.2 510 94.7
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.5e-275 951.0 493 96.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-273 946.0 510 93.9
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-273 944.5 510 93.7
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-257 892.1 510 89.4
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.0e-251 870.5 510 87.8
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 3.1e-231 805.1 503 81.3
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-228 795.8 513 82.7
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 2.1e-216 755.7 511 76.9
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-210 735.7 407 91.9
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.3e-209 731.9 506 75.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 3.0e-194 682.2 509 71.3
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 6.3e-192 674.5 514 70.2
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.4e-191 672.5 511 69.9
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.2e-189 666.0 509 67.8
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 3.0e-186 655.6 511 69.5
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.1e-183 647.1 513 67.4
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 5.3e-183 644.8 508 69.1
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 5.3e-183 644.8 508 69.1
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 4.2e-180 635.2 503 68.0
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.0e-178 630.6 509 65.8
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 2.8e-176 622.5 508 64.4
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.9e-172 609.8 511 63.8
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.8e-167 593.2 509 63.1
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-167 592.8 509 65.0
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 4.2e-164 582.0 511 63.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 3.4e-161 572.4 514 60.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 5.7e-161 571.6 514 60.1
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 5.7e-161 571.6 514 60.5
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 3.7e-160 568.9 508 61.0
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.1e-159 565.8 514 62.8
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.1e-159 565.8 514 62.8
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.1e-159 565.8 514 62.8
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.1e-159 565.8 514 62.8
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.1e-159 565.8 514 62.8
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 5.4e-159 565.1 514 60.1
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 7.0e-159 564.7 511 60.7
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.6e-158 563.5 442 68.1
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 4.5e-158 562.0 448 67.0
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 8.6e-157 557.8 511 61.1
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.2e-155 553.9 457 67.2
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-155 551.6 509 60.9
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 2.0e-150 536.6 515 59.4
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-150 536.2 508 60.2
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-146 523.5 513 56.1
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.2e-146 521.9 422 67.8
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-140 504.2 474 59.3
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.9e-140 503.4 427 65.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 2.5e-140 503.1 340 75.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.5e-140 503.1 505 56.2
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 9.2e-135 484.6 514 54.7
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.2e-127 459.5 485 55.9
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.8e-115 419.1 283 78.8
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 3.8e-112 409.5 381 59.8
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 8.4e-112 408.3 400 57.2
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.1e-111 407.9 346 66.8
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 9.3e-111 404.8 508 50.6
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.1e-109 399.1 455 52.3
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.9e-104 383.3 294 68.4
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 4.3e-100 369.4 471 49.3
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.8e-98 364.0 230 77.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-96 357.5 303 65.3
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.6e-89 333.6 435 50.6
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.7e-88 330.9 310 59.0
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 2.2e-88 330.5 337 56.4
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 9.7e-76 288.5 272 57.7
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 9.7e-76 288.5 272 57.7
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.7e-75 287.7 213 65.3
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.7e-75 287.7 213 65.3
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.7e-75 287.7 213 65.3
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.7e-75 287.7 213 65.3
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.7e-75 287.7 213 65.3
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.5e-72 275.4 198 73.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 5.7e-68 262.7 286 57.0
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.1e-66 258.5 167 76.6
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.8e-66 257.7 174 74.1
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.5e-63 248.1 493 38.5
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 6.1e-62 242.7 156 76.9
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.3e-59 232.3 251 53.8
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-58 231.1 143 77.6
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 5.9e-57 226.1 156 72.4
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 2.1e-54 217.6 142 75.4
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.6e-52 210.7 325 41.8
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-51 208.0 205 57.6
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 4.8e-51 206.5 122 82.8
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.1e-50 203.8 236 47.9
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 2.0e-49 201.1 222 55.4
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 8.0e-46 189.1 193 58.0
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 7.5e-44 182.6 449 35.9
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 1.8e-42 177.9 122 72.1
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 7.0e-42 176.0 136 63.2
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.2e-42 175.6 191 50.8
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 7.8e-41 172.6 176 56.2
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.1e-39 168.7 141 64.5
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-38 164.5 164 58.5
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 4.7e-38 163.3 106 75.5
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 8.3e-35 152.5 121 66.9
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 4.1e-34 150.2 129 63.6
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 9.2e-34 149.1 134 64.9
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.7e-33 147.5 172 53.5
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.3e-32 145.2 174 50.0
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 3.0e-32 144.1 121 57.9
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-31 141.7 85 78.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 6.2e-30 136.3 116 56.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 8.0e-30 136.0 102 60.8
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 5.2e-29 133.3 107 62.6
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 2.0e-28 131.3 119 68.1
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-28 131.3 86 79.1
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 9.8e-28 129.0 119 62.2
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 2.2e-27 127.9 106 62.3
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.2e-26 124.0 132 59.8
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 4.6e-25 120.2 98 64.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.0e-25 119.8 110 60.9
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.0e-24 119.0 113 61.9
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.1e-24 116.7 82 67.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.1e-24 116.7 115 51.3
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 5.6e-23 113.2 74 68.9
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.5e-23 112.5 371 28.3
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-22 111.7 121 59.5
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 2.1e-22 111.3 127 55.1
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.8e-22 110.9 82 64.6
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-20 102.8 88 58.0
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 4.9e-19 100.1 84 71.4
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.1e-17 94.7 61 77.0
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.1e-17 94.7 82 62.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.1e-17 94.7 54 90.7
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.0e-17 93.2 121 52.1
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 6.0e-17 93.2 87 62.1
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.0e-16 92.4 234 32.1
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 3.9e-16 90.5 60 70.0
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.6e-16 89.4 66 65.2
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 4.7e-14 83.6 65 67.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 2.4e-13 81.3 84 52.4
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 5.8e-12 76.6 82 50.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.6e-12 76.3 46 69.6
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.8e-11 73.9 62 56.5
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.4e-11 73.2 78 53.8
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.1e-10 72.4 59 59.3
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.2e-10 70.5 56 64.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.2e-10 70.5 56 64.3
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.7e-09 67.8 42 73.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 2.7e-09 67.8 54 63.0
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.6e-09 67.0 56 60.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.6e-09 67.0 52 71.2
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-08 65.9 78 50.0
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.7e-08 65.1 49 53.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.9e-07 61.6 56 57.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 3.3e-07 60.8 42 78.6
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 2.1e-06 58.2 34 76.5
Lalb_Chr07g0192631 Lupinus albus HOM05D004473 ORTHO05D005652 4.8e-06 57.0 54 50.0
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.2e-06 56.6 95 37.9


User provided reference genes

Program Settings