Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-282 975.7 483 100.0
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-278 961.8 483 99.0
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-275 952.6 493 96.8
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.1e-268 927.9 504 92.7
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.8e-266 921.0 510 91.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-262 908.7 510 90.8
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.6e-262 907.1 510 90.6
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.3e-246 854.4 510 86.3
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.7e-240 834.3 510 84.9
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 7.5e-222 773.9 503 78.7
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.2e-217 758.1 513 79.5
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.2e-206 723.4 511 74.4
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.6e-201 704.5 407 88.7
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.6e-200 703.0 506 73.9
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 4.3e-185 651.7 509 68.8
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 8.1e-184 647.5 511 67.7
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 8.9e-183 644.0 514 67.5
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.2e-181 639.4 509 65.4
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-177 626.7 511 67.1
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 2.1e-176 622.9 513 65.3
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-175 619.0 508 66.9
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-175 619.0 508 66.9
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.3e-173 613.6 503 66.0
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 6.4e-173 611.3 509 64.0
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 6.6e-170 601.3 508 62.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 4.4e-166 588.6 511 62.2
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 3.6e-160 568.9 509 61.1
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 4.8e-160 568.5 509 63.1
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.4e-159 566.2 511 61.8
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 3.0e-154 549.3 514 58.6
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 5.1e-154 548.5 514 58.6
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 3.3e-153 545.8 514 58.0
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 1.3e-152 543.9 511 59.1
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.1e-151 540.8 508 58.7
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-151 540.8 514 60.3
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-151 540.8 514 60.3
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-151 540.8 514 60.3
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-151 540.8 514 60.3
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-151 540.8 514 60.3
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 3.1e-151 539.3 514 58.0
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 2.0e-150 536.6 448 64.5
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 2.0e-150 536.6 511 59.5
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.9e-149 532.7 442 64.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.4e-149 531.2 457 64.6
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-146 523.5 500 60.2
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 9.6e-145 517.7 513 57.9
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 6.9e-143 511.5 508 58.3
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.5e-141 505.0 422 66.1
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.1e-140 504.2 511 54.4
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 5.1e-138 495.4 340 74.1
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.6e-134 483.0 505 54.9
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 4.5e-134 482.3 474 57.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.9e-134 481.9 427 63.0
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 4.8e-128 462.2 514 52.7
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.0e-122 443.0 485 54.2
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.2e-116 421.8 273 81.7
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 4.1e-111 406.0 371 60.4
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.5e-105 387.5 400 55.2
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.7e-104 382.9 508 48.8
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.3e-104 381.7 294 68.0
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.1e-103 381.3 336 64.9
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.7e-101 374.0 455 49.9
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 2.8e-96 356.7 230 75.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-94 350.9 469 48.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-88 330.5 303 62.0
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.1e-83 313.9 427 48.9
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-82 311.2 337 54.0
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.4e-82 311.2 310 56.5
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-73 280.8 272 56.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-73 280.8 272 56.6
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-73 280.4 213 63.8
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-73 280.4 213 63.8
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-73 280.4 213 63.8
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-73 280.4 213 63.8
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-73 280.4 213 63.8
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.4e-71 273.9 198 72.7
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 6.8e-66 255.8 167 75.4
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 2.9e-64 250.4 483 38.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 3.0e-61 240.4 156 75.6
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.9e-61 240.0 163 74.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 6.6e-61 239.2 291 52.6
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 8.9e-58 228.8 143 76.2
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-56 223.8 156 71.2
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.2e-55 219.9 258 51.6
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 1.0e-53 215.3 142 73.9
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-52 210.7 195 60.5
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 2.4e-50 204.1 122 81.1
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.9e-48 197.2 236 47.0
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.2e-46 191.8 325 38.8
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 4.3e-44 183.3 222 51.8
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 9.0e-42 175.6 122 70.5
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.8e-41 172.9 191 49.7
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 9.9e-41 172.2 176 55.7
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.3e-40 171.8 439 35.3
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-40 171.0 136 62.5
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 6.4e-40 169.5 193 54.4
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 5.4e-39 166.4 141 63.1
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-38 164.1 164 57.9
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.0e-37 162.2 106 74.5
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 8.1e-35 152.5 121 66.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.8e-33 146.4 128 56.2
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.4e-31 141.7 174 48.9
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 3.2e-31 140.6 85 77.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 4.6e-30 136.7 102 60.8
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 5.1e-29 133.3 107 62.6
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.5e-28 131.7 116 55.2
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.6e-28 129.0 86 76.7
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-27 128.3 134 57.5
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-27 128.3 119 67.2
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.8e-27 127.5 172 48.8
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 3.7e-27 127.1 129 57.4
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-26 124.8 106 61.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.5e-25 120.2 110 60.9
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.0e-24 116.7 82 67.1
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 5.0e-24 116.7 98 63.3
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 5.5e-23 113.2 74 68.9
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 1.6e-22 111.7 127 55.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.6e-22 111.7 115 50.4
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.1e-22 111.3 82 64.6
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 6.1e-22 109.8 159 40.9
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.8e-21 108.2 103 64.1
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.9e-21 107.1 119 55.5
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.4e-20 102.8 132 51.5
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 2.2e-19 101.3 88 58.0
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.2e-19 99.4 113 53.1
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 4.1e-18 97.1 84 70.2
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.6e-17 94.4 82 62.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 7.7e-17 92.8 234 31.6
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.0e-16 92.4 54 87.0
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-16 90.9 87 59.8
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 3.8e-16 90.5 60 70.0
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.5e-16 89.4 66 65.2
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 4.6e-14 83.6 65 67.7
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-13 81.3 52 75.0
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 5.7e-12 76.6 84 51.2
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.7e-12 76.6 121 46.3
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.4e-12 76.3 46 69.6
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 9.7e-12 75.9 80 50.0
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.7e-11 73.9 78 53.8
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.7e-11 73.9 62 56.5
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 3.1e-10 70.9 59 57.6
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.1e-10 70.5 56 64.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.1e-10 70.5 56 64.3
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.6e-09 67.8 42 73.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 2.6e-09 67.8 54 63.0
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.5e-09 67.0 56 60.7
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 7.7e-09 66.2 78 50.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.9e-08 64.3 52 67.3
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.9e-07 61.6 56 57.1
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 5.5e-07 60.1 49 51.0
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 1.6e-06 58.5 42 73.8
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 2.1e-06 58.2 34 76.5
Lalb_Chr07g0192631 Lupinus albus HOM05D004473 ORTHO05D005652 2.7e-06 57.8 54 50.0


User provided reference genes

Program Settings