Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 8.7e-309 1062.8 523 100.0
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.5e-308 1061.2 523 99.8
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.8e-229 797.3 520 75.0
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 4.3e-223 778.1 504 74.6
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 9.2e-218 760.4 447 82.3
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 6.6e-216 754.2 581 65.7
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.4e-211 737.6 448 79.5
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.9e-199 699.5 495 68.9
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 7.6e-196 687.6 514 64.2
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.4e-194 683.3 489 65.6
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 2.4e-194 682.6 523 63.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 3.5e-193 678.7 439 73.8
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.3e-190 670.2 492 66.9
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.3e-190 670.2 503 63.2
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 2.8e-190 669.1 508 66.7
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 5.3e-189 664.8 505 65.3
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.3e-187 660.2 503 62.6
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.8e-187 658.7 508 63.8
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 6.5e-187 657.9 508 63.8
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 9.3e-186 654.1 507 63.5
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.1e-185 652.9 504 63.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 2.7e-185 652.5 509 62.3
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 3.5e-185 652.1 504 63.7
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 3.5e-185 652.1 484 65.3
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.3e-184 649.4 506 64.0
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.9e-183 646.4 519 62.0
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 9.7e-183 644.0 494 64.8
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.6e-182 643.3 517 62.3
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 8.2e-182 641.0 510 62.0
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 8.2e-182 641.0 511 60.5
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.4e-181 640.2 490 64.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.4e-181 640.2 508 62.4
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.8e-181 639.8 489 64.6
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.4e-181 639.4 489 64.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.4e-181 639.4 489 64.4
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 4.1e-181 638.6 490 64.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.0e-180 636.3 513 62.2
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.0e-179 634.0 488 64.3
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 5.0e-179 631.7 507 63.1
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.4e-178 630.2 494 63.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 7.2e-178 627.9 508 60.6
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.1e-177 626.3 468 64.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 7.9e-177 624.4 491 61.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.0e-176 624.0 492 61.6
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.3e-176 623.6 481 63.4
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.3e-176 623.6 467 64.9
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.8e-176 623.2 491 62.5
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 8.7e-176 620.9 484 63.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.1e-175 620.5 508 59.6
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.7e-174 616.7 517 60.7
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.2e-174 616.3 480 62.5
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 3.7e-174 615.5 509 59.7
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 3.7e-174 615.5 501 60.3
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 4.8e-174 615.1 490 61.0
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.4e-173 613.6 456 64.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.4e-173 613.6 490 61.0
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 6.9e-173 611.3 481 63.2
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 9.1e-173 610.9 517 59.6
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.6e-172 609.4 490 62.9
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.6e-172 609.4 496 60.9
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 5.9e-172 608.2 456 63.2
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.0e-171 607.4 509 58.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.0e-171 605.1 493 60.4
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 3.2e-170 602.4 494 59.1
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 4.2e-170 602.1 478 60.7
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 4.2e-170 602.1 467 62.3
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.2e-169 600.5 499 61.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.6e-169 600.1 509 57.8
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 3.0e-168 595.9 454 63.4
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 6.7e-168 594.7 454 63.4
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 6.7e-168 594.7 454 63.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.3e-167 592.4 487 60.4
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 2.2e-166 589.7 484 59.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 4.8e-166 588.6 453 63.6
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.8e-165 586.6 532 56.4
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.2e-164 583.9 469 60.6
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.6e-164 582.8 482 59.8
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 5.0e-163 578.6 482 59.5
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.5e-163 578.2 394 69.3
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.5e-163 578.2 394 69.3
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 4.2e-162 575.5 459 59.7
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 3.0e-160 569.3 427 64.2
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 8.8e-160 567.8 496 58.3
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 1.1e-157 560.8 494 56.9
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 9.4e-154 547.7 387 69.5
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.0e-152 544.3 387 69.0
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.4e-152 543.9 394 66.0
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.4e-152 543.9 506 54.5
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 4.0e-152 542.3 384 68.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 8.8e-152 541.2 401 65.3
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.3e-149 531.9 527 53.5
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.2e-148 530.8 414 62.3
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.0e-148 530.0 431 60.6
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.0e-148 530.0 362 72.1
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.2e-144 515.4 451 54.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.4e-141 506.5 403 61.8
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 5.4e-141 505.4 385 62.6
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-139 501.1 395 62.5
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 8.0e-137 491.5 504 52.0
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 8.6e-131 471.5 396 59.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 6.1e-129 465.3 395 59.0
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.0e-128 462.6 473 50.7
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 4.9e-126 455.7 342 63.5
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 2.4e-125 453.4 448 51.6
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 4.7e-121 439.1 322 66.8
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 2.3e-120 436.8 467 49.9
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.5e-119 434.1 362 58.8
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.3e-118 431.0 470 48.9
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 3.5e-116 422.9 338 60.9
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.3e-114 416.0 304 66.1
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 8.3e-110 401.7 264 74.2
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.5e-106 390.2 257 71.6
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 7.6e-103 378.6 305 60.0
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 9.6e-98 361.7 325 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 7.8e-92 342.0 449 40.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-90 337.8 480 42.5
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.8e-89 333.6 276 58.7
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.9e-88 328.9 391 44.2
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.1e-83 312.8 485 38.8
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.6e-74 282.7 201 64.7
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.5e-66 258.1 217 60.4
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 3.0e-59 233.8 160 68.8
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.1e-53 215.3 195 52.8
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.2e-47 195.3 133 66.9
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 7.7e-39 166.0 121 62.0
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.2e-35 153.3 126 59.5
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 4.4e-34 150.2 126 58.7
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.2e-28 132.1 112 57.1
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.0e-27 127.5 118 55.1
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 5.7e-26 123.2 98 65.3
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.3e-25 122.1 98 64.3
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 6.6e-22 109.8 123 49.6
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.7e-15 87.8 101 46.5
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.3e-14 85.5 67 59.7
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.9e-14 84.0 100 47.0
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.7e-09 68.6 82 42.7
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.5e-07 60.8 82 40.2


User provided reference genes

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