Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 5.5e-252 874.0 504 100.0
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.3e-250 868.6 504 99.8
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 9.4e-151 537.7 492 69.5
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.1e-134 483.4 498 64.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.2e-127 459.5 522 60.5
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.1e-119 434.5 492 59.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 6.8e-117 425.2 497 60.4
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 9.8e-116 421.4 497 59.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-115 420.6 499 59.1
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-115 420.6 499 59.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 5.4e-114 415.6 533 56.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 9.2e-114 414.8 499 58.5
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.3e-111 405.2 493 57.4
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 9.5e-111 404.8 506 58.5
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.2e-110 404.4 503 57.1
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.4e-109 401.0 499 58.3
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.0e-109 399.4 500 57.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 4.0e-109 399.4 495 57.8
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.2e-108 397.9 504 58.1
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.2e-108 397.9 503 57.9
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.2e-108 397.9 518 55.8
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.0e-108 397.1 499 56.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.3e-107 394.4 495 57.6
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.9e-107 393.3 505 57.2
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.9e-107 393.3 546 52.9
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.7e-107 392.9 501 55.5
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.4e-106 390.2 491 56.8
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.2e-106 388.3 507 56.2
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.2e-105 387.9 497 56.7
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.7e-105 386.7 492 55.9
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.6e-105 386.0 498 55.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.8e-105 385.2 498 57.4
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 7.8e-105 385.2 504 55.4
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.7e-104 384.0 509 56.2
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.3e-104 383.6 509 55.4
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-104 383.6 494 55.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.9e-104 382.9 496 56.5
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.5e-103 380.9 497 54.3
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.9e-103 380.6 512 54.9
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.8e-102 376.7 515 52.6
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.4e-101 374.4 501 53.5
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.8e-101 374.0 498 55.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.0e-101 372.9 495 54.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 4.0e-101 372.9 512 54.5
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-100 370.2 503 53.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 7.5e-100 368.6 537 52.3
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.2e-99 367.1 512 53.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.9e-99 366.7 503 53.7
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.9e-99 366.7 499 53.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.9e-99 365.9 498 54.0
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 6.4e-99 365.5 490 52.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.1e-98 364.8 508 53.0
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.7e-97 360.1 515 51.3
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 3.5e-97 359.8 516 50.2
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 3.5e-97 359.8 515 51.3
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 3.5e-97 359.8 515 52.2
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 4.6e-97 359.4 514 50.8
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.0e-96 358.2 515 51.3
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.0e-96 358.2 517 52.2
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.3e-96 357.8 354 66.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.9e-96 356.3 516 49.8
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.9e-96 356.3 497 53.9
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.1e-93 346.7 382 61.8
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 5.8e-92 342.4 499 51.1
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 7.6e-92 342.0 503 53.1
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.2e-91 340.5 510 49.4
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 4.9e-91 339.3 496 52.0
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.9e-90 337.4 512 50.2
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.1e-90 335.5 528 49.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-89 334.3 497 52.5
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 4.6e-89 332.8 495 52.3
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 6.6e-88 328.9 494 52.0
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 4.3e-87 326.2 501 49.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-85 321.2 495 50.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.0e-85 319.7 498 48.6
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.2e-82 309.7 508 47.6
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.1e-82 308.9 495 49.1
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.2e-81 308.1 526 46.0
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-81 307.8 508 48.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.1e-81 307.4 499 48.7
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.6e-81 306.2 505 47.3
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 6.6e-80 302.4 504 47.4
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 6.6e-80 302.4 515 47.8
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.1e-79 301.6 496 49.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.9e-79 300.8 501 47.5
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.1e-78 297.4 584 44.0
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.8e-78 297.0 496 48.2
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 8.1e-78 295.4 217 78.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 4.0e-77 293.1 579 44.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.3e-77 292.7 512 46.3
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.9e-75 286.2 490 45.3
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-74 285.0 270 65.6
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.2e-74 283.5 523 45.7
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.9e-73 278.9 427 50.8
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.3e-72 278.1 498 45.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 5.1e-72 276.2 498 46.0
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 7.4e-71 272.3 501 46.5
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-69 268.1 421 49.6
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 9.0e-69 265.4 505 44.0
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 9.0e-69 265.4 515 45.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 7.6e-68 262.3 507 45.2
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.3e-67 261.5 500 46.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.4e-66 257.3 497 45.3
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.1e-65 254.2 514 42.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 7.9e-65 252.3 217 72.8
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.1e-62 244.2 531 42.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-61 241.9 531 42.9
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-61 241.9 529 42.9
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.8e-61 241.1 528 42.4
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.4e-61 240.7 490 41.2
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 2.0e-60 237.7 520 42.5
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.4e-58 231.5 373 48.0
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.8e-56 224.6 541 40.7
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 6.9e-53 212.6 450 43.3
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.9e-49 199.1 529 39.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 5.7e-47 193.0 528 38.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.7e-46 190.3 263 50.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 6.9e-45 186.0 228 49.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.1e-37 162.2 418 39.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.5e-36 156.8 104 88.5
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.8e-35 153.7 309 43.4
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.2e-34 149.4 226 47.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.0e-27 129.0 107 70.1
Ah.14g083310 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.1e-25 121.3 227 43.6
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.3e-22 112.1 204 47.1
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-21 109.0 108 61.1
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.7e-14 85.1 59 86.4
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-13 82.0 251 33.9
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.8e-09 67.8 75 56.0
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 8.0e-09 66.2 135 42.2
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.2e-07 62.4 55 60.0
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 3.7e-06 57.4 196 30.1


User provided reference genes

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