Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28938 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund28947 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund28953 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 99.9
Hund28962 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund28978 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29178 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29187 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29245 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29246 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29252 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29274 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29278 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29282 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29286 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29287 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29315 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29440 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29712 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund29819 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund30035 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund30176 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1250.3 682 100.0
Hund08794 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund12717 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund12844 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund23969 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund27677 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund27830 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund27882 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28329 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28437 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28449 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28598 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28612 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund28879 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund30119 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1241.1 684 99.4
Hund30366 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1239.2 684 99.3
Hund29754 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1169.5 676 95.6
Hund28952 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1152.9 637 99.8
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1116.3 627 98.9
Hund29253 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1116.3 627 98.9
Hund30040 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1106.7 612 100.0
Hund29025 Selenicereus undatus HOM05D001070 ORTHO05D005132 0.0e+00 1097.8 610 99.8
Hund28911 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.3e-301 1038.5 619 94.5
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.9e-295 1018.8 574 98.8
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.8e-283 977.6 549 99.5
Hund28588 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.9e-199 699.9 409 100.0
Hund29110 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.9e-199 699.9 409 100.0
Hund28853 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.1e-178 628.2 429 90.7
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.0e-152 543.1 308 97.7
Hma1.2p1_0096F.1_g047620 Hydrangea macrophylla HOM05D001070 ORTHO05D005132 1.0e-136 491.5 725 44.0
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 1.2e-129 468.0 729 42.1
Solyc00g500042.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.4e-125 454.5 726 42.0
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 6.1e-121 439.1 719 42.0
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 2.6e-119 433.7 720 42.1
Hund29500 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.8e-112 411.0 213 96.7
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.4e-109 401.4 718 39.3
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 4.7e-105 386.3 720 38.2
HanXRQChr15g0465411 Helianthus annuus HOM05D001070 ORTHO05D005132 4.7e-105 386.3 720 38.2
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 4.7e-105 386.3 720 38.2
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 4.7e-105 386.3 720 38.2
HanXRQChr03g0087621 Helianthus annuus HOM05D001070 ORTHO05D005132 3.1e-104 383.6 720 38.1
HanXRQChr00c0336g0573711 Helianthus annuus HOM05D001070 ORTHO05D005132 5.8e-103 379.4 720 37.6
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 5.4e-101 372.9 711 38.8
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 4.7e-97 359.8 693 37.2
Nn1g08629 Nelumbo nucifera HOM05D001070 ORTHO05D005132 8.7e-91 339.0 632 38.0
EL10Ac1g01959 Beta vulgaris HOM05D001070 ORTHO05D005132 4.0e-88 330.1 393 50.9
EL10As1g23055 Beta vulgaris HOM05D001070 ORTHO05D005132 5.3e-88 329.7 391 50.4
BcaB03g16407 Brassica carinata HOM05D001070 ORTHO05D005132 2.6e-87 327.4 705 35.2
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 2.6e-87 327.4 707 34.7
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 2.6e-87 327.4 707 34.7
BolSC45t60903H Brassica oleracea HOM05D001070 ORTHO05D005132 1.1e-85 322.0 706 34.4
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 4.2e-85 320.1 731 35.0
HanXRQChr09g0258471 Helianthus annuus HOM05D001070 ORTHO05D005132 1.6e-81 308.1 647 35.9
HanXRQChr15g0465481 Helianthus annuus HOM05D001070 ORTHO05D005132 1.6e-81 308.1 647 35.9
Hund28852 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.8e-81 306.6 162 95.7
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 2.8e-73 280.8 695 32.7
Migut.D01247 Erythranthe guttata HOM05D001070 ORTHO05D005132 1.7e-70 271.6 610 35.6
Lju5009P0T28 Lonicera japonica HOM05D001070 ORTHO05D005132 5.5e-69 266.5 634 34.1
BolSC35t60686H Brassica oleracea HOM05D001070 ORTHO05D005132 7.6e-63 246.1 623 31.6
Hund28589 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.2e-61 239.6 126 96.0
RcHm_v2.0_Chr7g0212321 Rosa chinensis HOM05D001070 ORTHO05D005132 6.1e-60 236.5 383 41.8
arahy.Tifrunner.gnm1.ann1.B1X1LX Arachis hypogaea HOM05D001070 ORTHO05D005132 9.7e-58 229.2 645 31.6
HanXRQChr13g0413611 Helianthus annuus HOM05D001070 ORTHO05D005132 1.7e-54 218.4 390 38.5
C07p33480 Brassica napus HOM05D001070 ORTHO05D005132 2.9e-54 217.6 482 31.3
PSO357G0618 Papaver somniferum HOM05D001070 ORTHO05D005132 2.9e-54 217.6 384 39.6
ClCG11G009240 Citrullus lanatus HOM05D001070 ORTHO05D005132 9.4e-53 212.6 378 39.7
Hund31094 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.2e-52 212.2 102 99.0
HanXRQChr00c0703g0576911 Helianthus annuus HOM05D001070 ORTHO05D005132 2.1e-52 211.5 397 37.8
PSO063G4510 Papaver somniferum HOM05D001070 ORTHO05D005132 2.3e-51 208.0 385 40.8
Lj2P1238T100 Lonicera japonica HOM05D001070 ORTHO05D005132 3.0e-51 207.6 367 39.5
BolSC29t60512H Brassica oleracea HOM05D001070 ORTHO05D005132 3.7e-49 200.7 375 35.7
C02p28800 Brassica napus HOM05D001070 ORTHO05D005132 1.8e-48 198.4 371 34.5
CAN.G1139.17 Capsicum annuum HOM05D001070 ORTHO05D005132 5.5e-45 186.8 199 52.3
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.7e-44 183.7 183 54.6
HanXRQChr08g0222871 Helianthus annuus HOM05D001070 ORTHO05D005132 4.4e-42 177.2 170 53.5
BolC2t10603H Brassica oleracea HOM05D001070 ORTHO05D005132 1.3e-41 175.6 387 35.4
C05p53850 Brassica napus HOM05D001070 ORTHO05D005132 3.7e-41 174.1 340 34.4
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 4.1e-40 170.6 263 39.2
Hund20483 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.0e-40 169.9 131 72.5
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 9.4e-37 159.5 184 50.5
MELO3C027053.2 Cucumis melo HOM05D001070 ORTHO05D005132 3.6e-36 157.5 157 56.7
ClCG11G009250 Citrullus lanatus HOM05D001070 ORTHO05D005132 1.4e-32 145.6 214 42.5
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 1.4e-32 145.6 144 54.2
Gohir.A09G045792 Gossypium hirsutum HOM05D001070 ORTHO05D005132 5.5e-29 133.7 274 34.7
Potri.005G150450 Populus trichocarpa HOM05D001070 ORTHO05D005132 1.2e-26 125.9 95 66.3
MBI10_g47595_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 1.5e-26 125.6 97 62.9
Medtr2g039370 Medicago truncatula HOM05D001070 ORTHO05D005132 2.6e-26 124.8 131 52.7
Peaxi162Scf00030g02113 Petunia axillaris HOM05D001070 ORTHO05D005132 7.5e-26 123.2 175 44.0
GSVIVG01005309001 Vitis vinifera HOM05D001070 ORTHO05D005132 6.3e-25 120.2 351 30.2
Nitab4.5_0007104g0080 Nicotiana tabacum HOM05D001070 ORTHO05D005132 5.9e-23 113.6 192 40.1
Medtr6g042180 Medicago truncatula HOM05D001070 ORTHO05D005132 2.2e-22 111.7 92 59.8
Gohir.1Z049494 Gossypium hirsutum HOM05D001070 ORTHO05D005132 5.5e-21 107.1 210 36.2
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 7.2e-21 106.7 96 55.2
Nitab4.5_0012234g0050 Nicotiana tabacum HOM05D001070 ORTHO05D005132 9.4e-21 106.3 91 54.9
MBI09_g14156_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 2.1e-20 105.1 91 59.3
arahy.Tifrunner.gnm1.ann1.1Y8W5R Arachis hypogaea HOM05D001070 ORTHO05D018510 2.3e-19 101.7 87 59.8
Gohir.A09G039280 Gossypium hirsutum HOM05D001070 ORTHO05D005132 6.8e-19 100.1 113 53.1
Gorai.004G219800 Gossypium raimondii HOM05D001070 ORTHO05D005132 2.0e-18 98.6 260 31.5
Medtr8g093760 Medicago truncatula HOM05D001070 ORTHO05D005132 2.0e-18 98.6 192 35.9
HanXRQChr17g0569771 Helianthus annuus HOM05D001070 ORTHO05D005132 2.6e-18 98.2 227 33.0
MBI08_g37092_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 2.6e-18 98.2 86 57.0
Gohir.D11G334275 Gossypium hirsutum HOM05D001070 ORTHO05D005132 9.8e-18 96.3 113 51.3
Gohir.D08G133232 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.3e-17 95.9 93 58.1
BolSC37t60799H Brassica oleracea HOM05D001070 ORTHO05D005132 4.9e-17 94.0 262 31.3
Peaxi162Scf00080g00527 Petunia axillaris HOM05D001070 ORTHO05D036944 4.9e-17 94.0 140 43.6
Solyc11g021260.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 4.9e-17 94.0 133 46.6
Gorai.004G136300 Gossypium raimondii HOM05D001070 ORTHO05D005132 8.3e-17 93.2 154 42.9
MBI08_g41352_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 8.3e-17 93.2 81 61.7
SEGI_20187 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 8.3e-17 93.2 122 41.8
SEGI_30878 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 8.3e-17 93.2 122 41.8
SEGI_36485 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 8.3e-17 93.2 122 41.8
SEGI_27427 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.1e-16 92.8 122 41.8
SEGI_38135 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.4e-16 92.4 121 42.1
Gorai.010G136000 Gossypium raimondii HOM05D001070 ORTHO05D005132 9.2e-16 89.7 232 31.9
Gohir.D11G237240 Gossypium hirsutum HOM05D001070 ORTHO05D005132 2.7e-15 88.2 113 47.8
Solyc02g011820.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 4.5e-15 87.4 150 40.0
arahy.Tifrunner.gnm1.ann1.IUHB90 Arachis hypogaea HOM05D001070 ORTHO05D005132 5.0e-14 84.0 93 49.5
SEGI_01987 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.5e-13 82.4 143 35.7
Solyc07g041680.2 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.9e-13 82.0 143 36.4
Gorai.002G047700 Gossypium raimondii HOM05D001070 ORTHO05D005132 1.2e-12 79.3 57 66.7
Peaxi162Scf00030g02112 Petunia axillaris HOM05D001070 ORTHO05D005132 1.6e-12 79.0 278 26.3
Medtr7g104140 Medicago truncatula HOM05D001070 ORTHO05D005132 2.1e-12 78.6 72 55.6
Gohir.A13G086425 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.0e-11 76.3 141 34.0
Gohir.A02G108504 Gossypium hirsutum HOM05D001070 ORTHO05D005132 5.2e-11 73.9 93 47.3
Nn3g17667 Nelumbo nucifera HOM05D000388 ORTHO05D000473 1.2e-10 72.8 64 57.8
Nitab4.5_0006409g0070 Nicotiana tabacum HOM05D001070 ORTHO05D010350 5.7e-10 70.5 167 33.5
Solyc02g011830.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 5.7e-10 70.5 67 52.2
Peaxi162Scf00080g00521 Petunia axillaris HOM05D001070 ORTHO05D005132 1.3e-09 69.3 94 45.7
Medtr1g051590 Medicago truncatula HOM05D000533 ORTHO05D001069 1.7e-09 68.9 150 38.0
Hund18411 Selenicereus undatus HOM05D001070 ORTHO05D005132 4.9e-09 67.4 80 46.2
Gorai.006G079500 Gossypium raimondii HOM05D001070 ORTHO05D005132 8.3e-09 66.6 96 44.8
Solyc01g009550.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.8e-08 65.5 72 52.8
Solyc11g021240.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 2.4e-08 65.1 104 41.3
arahy.Tifrunner.gnm1.ann1.LH3NEH Arachis hypogaea HOM05D001070 ORTHO05D005132 9.2e-08 63.2 151 33.1
Gorai.002G064200 Gossypium raimondii HOM05D001070 ORTHO05D005132 2.7e-07 61.6 117 38.5
Gorai.012G102100 Gossypium raimondii HOM05D001070 ORTHO05D005132 4.6e-07 60.8 167 30.5
Nitab4.5_0006502g0050 Nicotiana tabacum HOM05D001070 ORTHO05D036944 4.6e-07 60.8 119 37.0
Solyc10g047390.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.0e-06 59.7 85 41.2
Medtr1g037160 Medicago truncatula HOM05D001070 ORTHO05D005132 3.0e-06 58.2 58 58.6
Glyma.18G155800 Glycine max HOM05D001070 ORTHO05D005132 3.9e-06 57.8 200 31.5
Nn029s41577 Nelumbo nucifera HOM05D001070 ORTHO05D005132 8.6e-06 56.6 32 68.8


User provided reference genes

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