Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.4e-66 255.0 140 100.0
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.4e-66 255.0 140 100.0
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 3.4e-66 255.0 140 100.0
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.1e-51 206.8 189 67.7
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 1.1e-51 206.8 189 67.7
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.9e-49 198.7 189 64.6
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.9e-49 198.7 189 64.6
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 9.2e-48 193.7 189 65.1
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.7e-47 192.2 184 65.8
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.7e-47 192.2 188 64.4
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 3.5e-47 191.8 184 64.1
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 6.0e-47 191.0 188 62.8
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 6.0e-47 191.0 189 63.0
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 7.8e-47 190.7 188 62.8
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 1.0e-46 190.3 189 64.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.3e-46 189.1 184 64.1
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 3.0e-46 188.7 188 62.2
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 5.1e-46 188.0 184 63.0
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 8.6e-46 187.2 181 63.5
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 1.1e-45 186.8 189 61.4
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 1.1e-45 186.8 189 61.4
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.5e-45 186.4 184 64.1
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 1.9e-45 186.0 140 76.4
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 3.3e-45 185.3 189 60.8
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 4.3e-45 184.9 188 61.2
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 4.3e-45 184.9 184 62.5
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 7.3e-45 184.1 185 61.1
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 9.6e-45 183.7 189 60.3
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.6e-45 183.7 184 62.0
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.6e-45 183.7 184 62.0
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.6e-45 183.7 184 62.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.6e-44 183.0 168 66.1
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 3.6e-44 181.8 185 60.5
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 3.6e-44 181.8 184 60.9
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 3.6e-44 181.8 184 60.9
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-43 180.3 186 60.2
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 1.1e-43 180.3 190 60.5
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.1e-43 180.3 184 60.3
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.4e-43 179.1 186 59.1
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.4e-43 179.1 186 59.1
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 3.1e-43 178.7 186 60.2
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 3.1e-43 178.7 189 59.8
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 3.1e-43 178.7 189 59.3
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 6.9e-43 177.6 188 59.6
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-42 176.8 180 61.1
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 2.0e-42 176.0 188 58.0
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.6e-42 175.6 187 59.4
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 2.6e-42 175.6 187 59.4
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 2.6e-42 175.6 187 59.4
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 3.4e-42 175.3 186 59.1
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 3.4e-42 175.3 186 59.1
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 3.4e-42 175.3 186 59.1
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 9.9e-42 173.7 184 59.8
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 9.9e-42 173.7 184 59.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 2.2e-41 172.6 186 58.6
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 2.2e-41 172.6 186 58.6
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 2.2e-41 172.6 186 58.6
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 2.2e-41 172.6 186 58.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 2.9e-41 172.2 184 58.7
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 8.4e-41 170.6 186 58.1
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.4e-40 169.9 185 57.3
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 1.4e-40 169.9 185 57.3
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.4e-40 169.9 152 67.8
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.0e-38 163.7 168 60.1
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 3.9e-38 161.8 187 57.2
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 3.3e-37 158.7 179 56.4
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 4.3e-37 158.3 188 55.9
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 7.3e-37 157.5 176 54.5
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 4.0e-35 151.8 153 63.4
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 2.0e-34 149.4 180 52.8
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 2.6e-34 149.1 159 60.4
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.3e-33 146.7 230 45.2
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 2.2e-33 146.0 160 58.8
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.8e-33 145.2 85 94.1
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 3.8e-33 145.2 85 94.1
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 2.4e-32 142.5 153 60.8
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 2.4e-32 142.5 188 53.2
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 5.4e-32 141.4 85 90.6
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.2e-31 140.2 85 89.4
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.6e-31 139.8 85 91.8
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 2.7e-31 139.0 85 87.1
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.5e-31 138.7 85 87.1
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 4.6e-31 138.3 161 56.5
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.6e-31 138.3 158 57.0
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 7.9e-31 137.5 173 54.3
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.8e-30 136.3 163 55.8
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.3e-30 136.0 156 57.1
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.0e-30 135.6 85 85.9
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 8.7e-30 134.0 149 56.4
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-29 133.7 77 92.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.1e-29 133.7 84 85.7
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.9e-29 132.9 85 84.7
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 4.3e-29 131.7 162 51.2
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 2.8e-28 129.0 150 56.0
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.8e-28 128.3 87 80.5
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 6.2e-28 127.9 137 57.7
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 9.0e-27 124.0 187 48.7
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.2e-26 123.6 150 52.7
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.2e-26 123.6 138 58.0
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.5e-26 123.2 187 49.2
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.3e-25 120.2 85 77.6
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.2e-23 113.6 181 45.9
FAN09G0092 Fragaria x ananassa HOM05D000107 ORTHO05D002484 3.5e-23 112.1 64 92.2
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.0e-23 111.3 158 50.0
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 7.9e-23 110.9 160 50.0
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 1.1e-21 107.1 186 45.2
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.5e-21 106.7 172 47.1
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-21 105.1 130 53.8
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 4.3e-21 105.1 60 93.3
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 1.6e-20 103.2 137 51.1
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.8e-20 101.7 153 47.7
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.1e-19 99.0 73 75.3
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 4.0e-19 98.6 156 46.8
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 9.0e-19 97.4 99 57.6
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 7.6e-18 94.4 140 47.9
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.2e-17 92.8 117 54.7
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 6.5e-17 91.3 146 43.2
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 7.1e-16 87.8 78 69.2
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 7.1e-16 87.8 136 45.6
TPR.G37210 Trifolium pratense HOM05D000533 ORTHO05D002807 2.7e-15 85.9 55 78.2
Oeu029191.1 Olea europaea HOM05D000533 ORTHO05D002807 3.5e-15 85.5 123 44.7
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 4.6e-15 85.1 78 66.7
Nitab4.5_0007979g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.0e-15 84.7 59 81.4
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 3.0e-14 82.4 132 46.2
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 1.1e-13 80.5 77 59.7
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.9e-13 79.7 132 45.5
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 2.5e-13 79.3 132 44.7
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-13 79.3 132 44.7
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 3.3e-13 79.0 78 64.1
TPR.G9467 Trifolium pratense HOM05D000533 ORTHO05D002807 7.4e-13 77.8 43 93.0
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 1.6e-12 76.6 78 61.5
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-12 76.6 82 57.3
BolC7t43857H Brassica oleracea HOM05D000533 ORTHO05D002807 3.7e-12 75.5 40 92.5
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 3.7e-12 75.5 40 92.5
BolSC37t60796H Brassica oleracea HOM05D000533 ORTHO05D002807 3.7e-12 75.5 40 92.5
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 3.7e-12 75.5 40 92.5
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 3.7e-12 75.5 40 92.5
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 4.1e-11 72.0 103 54.4
Nn8g40522 Nelumbo nucifera HOM05D000533 ORTHO05D002807 4.1e-11 72.0 41 90.2
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 6.9e-11 71.2 76 59.2
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 9.0e-11 70.9 78 55.1
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 4.6e-07 58.5 62 56.5
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.3e-06 56.2 62 56.5
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 6.7e-06 54.7 92 33.7


User provided reference genes

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