Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 2.6e-185 652.9 642 100.0
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 2.6e-185 652.9 642 100.0
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.0e-69 267.3 173 76.9
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 1.2e-52 212.2 129 76.7
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.0e-52 211.5 130 76.2
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 5.7e-52 209.9 127 74.8
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 7.5e-52 209.5 127 76.4
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 9.7e-52 209.1 127 77.2
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 4.8e-51 206.8 127 75.6
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 4.8e-51 206.8 127 73.2
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.1e-50 205.7 127 75.6
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.1e-50 205.7 127 75.6
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 1.1e-50 205.7 127 72.4
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 1.4e-50 205.3 127 72.4
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 4.1e-50 203.8 127 74.8
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 4.1e-50 203.8 125 75.2
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 5.3e-50 203.4 127 74.0
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 5.3e-50 203.4 127 73.2
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.3e-50 203.4 127 74.8
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.2e-49 202.2 138 68.8
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 2.0e-49 201.4 127 74.0
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 3.5e-49 200.7 119 76.5
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 4.5e-49 200.3 127 73.2
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 4.5e-49 200.3 127 71.7
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.7e-48 198.4 127 71.7
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.7e-48 198.4 127 71.7
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 1.7e-48 198.4 130 72.3
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 1.7e-48 198.4 129 72.9
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 2.2e-48 198.0 133 70.7
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.2e-48 198.0 127 74.0
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 2.9e-48 197.6 127 70.1
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 2.9e-48 197.6 128 74.2
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 5.0e-48 196.8 143 66.4
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 6.5e-48 196.4 127 69.3
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 8.5e-48 196.1 127 67.7
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 8.5e-48 196.1 133 69.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.5e-48 196.1 119 75.6
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 1.1e-47 195.7 127 70.9
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.5e-47 195.3 127 71.7
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.9e-47 194.9 127 66.9
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 2.5e-47 194.5 126 69.0
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 4.2e-47 193.7 127 69.3
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 4.2e-47 193.7 127 69.3
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 4.2e-47 193.7 129 69.8
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 4.2e-47 193.7 124 72.6
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 5.5e-47 193.4 127 70.9
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 5.5e-47 193.4 127 70.9
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 7.2e-47 193.0 129 69.0
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 1.6e-46 191.8 127 70.9
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 2.1e-46 191.4 138 61.6
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 2.7e-46 191.0 127 68.5
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 2.7e-46 191.0 127 67.7
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 4.7e-46 190.3 127 69.3
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 4.7e-46 190.3 124 71.8
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 4.7e-46 190.3 124 71.8
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 1.0e-45 189.1 136 68.4
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 1.4e-45 188.7 124 71.8
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 1.8e-45 188.3 140 62.9
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 1.5e-44 185.3 127 69.3
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 2.6e-44 184.5 130 66.9
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 2.6e-44 184.5 127 70.9
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 3.4e-44 184.1 130 66.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 4.4e-44 183.7 119 68.9
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 4.4e-44 183.7 130 66.2
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 4.4e-44 183.7 127 65.4
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 4.4e-44 183.7 129 65.9
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 4.4e-44 183.7 129 64.3
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 7.5e-44 183.0 131 66.4
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 7.5e-44 183.0 127 70.1
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 7.5e-44 183.0 129 66.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 9.8e-44 182.6 119 68.9
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 9.8e-44 182.6 127 64.6
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 1.7e-43 181.8 130 66.2
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 1.7e-43 181.8 130 62.3
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 3.7e-43 180.6 133 66.2
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 4.8e-43 180.3 127 68.5
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.1e-42 179.1 130 62.3
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 1.1e-42 179.1 127 67.7
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 1.1e-42 179.1 130 67.7
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.8e-42 178.3 127 69.3
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 5.4e-42 176.8 117 66.7
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 1.2e-41 175.6 129 66.7
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 2.7e-41 174.5 130 60.8
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 2.7e-41 174.5 127 63.0
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 3.5e-41 174.1 130 62.3
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 3.5e-41 174.1 130 60.8
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 3.5e-41 174.1 130 60.8
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 3.5e-41 174.1 130 60.8
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 1.0e-40 172.6 130 60.0
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 1.3e-40 172.2 129 60.5
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.7e-40 171.8 108 75.0
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 5.0e-40 170.2 126 62.7
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 6.6e-40 169.9 130 60.8
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 6.6e-40 169.9 131 61.1
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 1.5e-39 168.7 129 60.5
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 1.9e-39 168.3 132 59.1
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 2.5e-39 167.9 132 59.8
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 2.5e-39 167.9 128 56.2
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 3.3e-39 167.5 98 76.5
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 4.2e-39 167.2 132 61.4
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 5.5e-39 166.8 129 62.0
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 7.2e-39 166.4 129 59.7
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 4.7e-38 163.7 141 55.3
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 1.0e-37 162.5 129 58.9
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 1.4e-37 162.2 129 58.9
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 5.2e-37 160.2 117 66.7
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 1.2e-36 159.1 134 56.0
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.5e-36 158.7 139 56.1
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 2.0e-36 158.3 120 62.5
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 4.4e-36 157.1 130 58.5
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.7e-35 155.2 147 51.0
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 2.2e-35 154.8 101 71.3
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 3.7e-35 154.1 100 75.0
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 4.9e-35 153.7 100 71.0
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 4.1e-34 150.6 92 76.1
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 7.8e-33 146.4 145 45.5
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.5e-31 142.1 127 55.1
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 1.5e-31 142.1 122 50.8
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 1.9e-31 141.7 111 64.0
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 2.5e-31 141.4 119 52.1
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 3.6e-30 137.5 117 50.4
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 2.3e-29 134.8 118 48.3
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 2.0e-28 131.7 116 48.3
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 6.4e-27 126.7 86 66.3
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.4e-26 125.6 109 52.3
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 4.1e-26 124.0 80 67.5
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 3.3e-23 114.4 117 42.7
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 5.6e-23 113.6 136 43.4
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.7e-17 94.7 85 54.1
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.1e-13 82.8 73 53.4
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 8.3e-11 73.2 87 46.0
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 9.5e-07 59.7 58 44.8
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 6.2e-06 57.0 57 45.6


User provided reference genes

Program Settings