Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.8e-283 976.9 483 100.0
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-278 962.6 483 99.0
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.6e-278 960.3 493 97.4
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-270 935.6 504 93.3
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-268 927.5 510 92.2
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.3e-265 916.4 510 91.4
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-264 914.8 510 91.2
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-248 862.4 510 86.9
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.0e-242 840.9 510 85.3
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 2.3e-223 778.9 503 79.1
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-219 766.1 513 80.1
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 8.6e-210 733.8 511 75.1
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.2e-203 713.4 506 74.3
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-201 706.1 407 88.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 2.1e-187 659.4 509 69.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 3.9e-186 655.2 511 68.3
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 3.3e-185 652.1 514 68.1
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 8.1e-184 647.5 509 66.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-179 633.6 511 67.3
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 7.8e-179 630.9 513 65.9
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-176 623.2 508 67.3
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-176 623.2 508 67.3
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 8.9e-175 617.5 503 66.4
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.3e-173 613.6 509 64.4
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 3.5e-171 605.5 508 62.8
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 3.1e-167 592.4 511 62.6
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.9e-161 573.2 509 61.3
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.5e-161 572.8 511 62.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 7.3e-161 571.2 509 63.3
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.6e-155 553.5 514 58.6
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.6e-155 553.5 514 58.9
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 2.7e-155 552.7 514 58.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 3.9e-154 548.9 508 59.3
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 8.7e-154 547.7 511 59.5
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 58.4
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 60.7
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 60.7
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 60.7
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 60.7
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 514 60.7
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.3e-152 543.9 442 65.8
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.4e-151 540.4 448 65.0
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-151 540.4 511 59.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.9e-148 530.0 457 64.6
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.1e-148 528.1 500 60.4
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 8.7e-146 521.2 513 58.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 8.2e-144 514.6 508 58.5
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.1e-140 504.2 422 66.1
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.9e-140 503.4 511 54.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 2.5e-140 503.1 340 75.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.4e-135 487.3 505 55.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 5.3e-135 485.3 474 57.6
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.9e-133 479.6 427 62.8
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 6.7e-130 468.4 514 53.1
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 7.9e-123 444.9 485 54.6
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.5e-116 422.2 273 81.7
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.8e-111 407.1 376 60.4
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 3.0e-106 389.8 400 55.2
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 3.3e-105 386.3 336 65.5
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.3e-104 382.1 508 48.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.3e-104 382.1 455 50.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-103 380.9 294 68.0
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.8e-98 364.0 230 77.0
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 8.3e-96 355.1 469 48.4
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 8.9e-90 335.1 303 61.7
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-82 311.2 435 48.5
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 5.2e-82 309.3 310 56.1
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 6.8e-82 308.9 337 53.7
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 9.5e-76 288.5 272 57.7
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 9.5e-76 288.5 272 57.7
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-75 287.7 213 65.3
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-75 287.7 213 65.3
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-75 287.7 213 65.3
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-75 287.7 213 65.3
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.6e-75 287.7 213 65.3
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.3e-72 275.4 198 73.2
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.1e-66 258.5 167 76.6
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 4.4e-65 253.1 483 39.3
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.1e-63 245.7 163 74.8
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 6.0e-62 242.7 156 76.9
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.3e-61 240.7 286 53.1
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-58 231.1 143 77.6
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 5.8e-57 226.1 156 72.4
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.9e-55 221.1 258 51.6
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 2.1e-54 217.6 142 75.4
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 9.6e-52 208.8 195 60.0
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 4.8e-51 206.5 122 82.8
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.1e-50 203.8 236 47.9
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.3e-45 187.6 325 38.5
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 3.6e-43 180.3 222 51.4
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 1.8e-42 177.9 122 72.1
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 6.9e-42 176.0 136 63.2
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.0e-42 175.6 191 50.8
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-41 172.6 176 56.2
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 3.8e-40 170.2 439 35.3
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 4.9e-40 169.9 193 54.4
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.1e-39 168.7 141 64.5
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-38 164.5 164 58.5
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 4.6e-38 163.3 106 75.5
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 6.2e-35 152.9 121 66.9
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.3e-32 145.2 174 50.0
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-32 144.1 121 57.9
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-31 141.7 85 78.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 6.0e-30 136.3 116 56.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 7.9e-30 136.0 102 60.8
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 3.9e-29 133.7 107 62.6
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 1.9e-28 131.3 119 68.1
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.9e-28 131.3 86 79.1
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 2.1e-27 127.9 106 62.3
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.8e-27 127.5 129 57.4
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-26 125.6 134 56.7
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.8e-26 124.8 172 48.3
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 4.5e-25 120.2 98 64.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.8e-25 119.8 110 60.9
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.0e-24 116.7 82 67.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.0e-24 116.7 115 51.3
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 5.5e-23 113.2 74 68.9
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-22 111.7 103 65.0
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 2.1e-22 111.3 127 55.1
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.7e-22 110.9 82 64.6
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.7e-22 110.9 159 41.5
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.0e-21 107.5 119 55.5
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 7.4e-20 102.8 88 58.0
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.8e-19 100.1 132 50.8
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 4.8e-19 100.1 84 71.4
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.3e-18 96.7 113 52.2
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-17 94.7 82 62.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-17 94.7 54 90.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 5.9e-17 93.2 87 62.1
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.0e-16 92.4 234 32.1
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.5e-16 89.4 66 65.2
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 2.5e-15 87.8 60 68.3
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 4.6e-14 83.6 65 67.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 2.3e-13 81.3 84 52.4
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.0e-12 78.2 52 73.1
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 5.7e-12 76.6 82 50.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.4e-12 76.3 46 69.6
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.7e-11 73.9 62 56.5
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.8e-11 73.6 121 45.5
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.3e-11 73.2 78 53.8
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.1e-10 72.4 59 59.3
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.1e-10 70.5 56 64.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.1e-10 70.5 56 64.3
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.6e-09 67.8 42 73.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 2.6e-09 67.8 54 63.0
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.5e-09 67.0 56 60.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.5e-09 67.0 52 71.2
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 5.9e-09 66.6 50 66.0
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.7e-08 65.1 49 53.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.9e-07 61.6 56 57.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 3.2e-07 60.8 42 78.6
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 2.1e-06 58.2 34 76.5
Lalb_Chr07g0192631 Lupinus albus HOM05D004473 ORTHO05D005652 4.7e-06 57.0 54 50.0
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.1e-06 56.6 95 37.9


User provided reference genes

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