Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.3e-34 147.1 75 100.0
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.7e-32 142.1 75 96.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.3e-19 99.4 64 78.1
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.2e-16 88.6 64 70.3
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.9e-16 88.2 68 67.6
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 5.0e-16 87.4 64 70.3
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 1.9e-15 85.5 57 73.7
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 2.5e-15 85.1 64 67.2
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 3.2e-15 84.7 64 65.6
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.5e-15 84.0 64 65.6
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.5e-15 84.0 64 65.6
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 5.5e-15 84.0 57 71.9
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 5.5e-15 84.0 67 64.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.2e-14 82.8 64 64.1
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 1.2e-14 82.8 64 65.6
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.2e-14 82.8 57 70.2
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.6e-14 82.4 64 62.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 2.1e-14 82.0 64 62.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 2.7e-14 81.6 59 69.5
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.6e-14 81.3 64 64.1
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 4.7e-14 80.9 64 60.9
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 4.7e-14 80.9 68 58.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 6.1e-14 80.5 64 64.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 6.1e-14 80.5 57 66.7
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.4e-13 79.3 68 54.4
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 1.4e-13 79.3 64 56.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.4e-13 79.3 64 65.6
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 1.8e-13 79.0 64 65.6
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 1.8e-13 79.0 58 60.3
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 4.0e-13 77.8 67 61.2
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 4.0e-13 77.8 67 61.2
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 8.8e-13 76.6 64 59.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 8.8e-13 76.6 59 66.1
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 8.8e-13 76.6 64 62.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 1.2e-12 76.3 64 62.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-12 75.9 64 56.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.5e-12 75.9 64 57.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.5e-12 75.9 64 60.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.6e-12 75.1 64 57.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.6e-12 75.1 64 64.1
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 2.6e-12 75.1 64 53.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 3.4e-12 74.7 64 57.8
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 5.7e-12 73.9 64 51.6
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 5.7e-12 73.9 64 56.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 5.7e-12 73.9 56 62.5
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.7e-12 73.9 68 51.5
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 7.5e-12 73.6 64 51.6
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 7.5e-12 73.6 61 59.0
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 9.7e-12 73.2 58 58.6
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.3e-11 72.8 58 60.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 1.3e-11 72.8 64 57.8
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 1.3e-11 72.8 59 64.4
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.3e-11 72.8 64 56.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.8e-11 71.6 58 56.9
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 3.7e-11 71.2 64 54.7
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.8e-11 70.9 64 56.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 4.8e-11 70.9 64 54.7
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 6.3e-11 70.5 64 50.0
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 6.3e-11 70.5 64 50.0
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 8.3e-11 70.1 64 53.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 8.3e-11 70.1 61 57.4
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-10 69.7 58 55.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.1e-10 69.7 58 55.2
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.4e-10 69.3 65 52.3
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 1.4e-10 69.3 64 54.7
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.8e-10 68.9 64 48.4
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.4e-10 68.6 57 59.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.1e-10 68.2 58 53.4
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 4.1e-10 67.8 64 46.9
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 4.1e-10 67.8 64 46.9
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.3e-10 67.4 64 50.0
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 5.3e-10 67.4 64 48.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.3e-10 67.4 64 48.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.3e-10 67.4 64 48.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.3e-10 67.4 64 48.4
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 7.0e-10 67.0 66 56.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 9.1e-10 66.6 68 47.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 9.1e-10 66.6 68 47.1
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.2e-09 66.2 64 48.4
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.2e-09 66.2 64 46.9
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.0e-09 65.5 68 50.0
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.0e-09 65.5 57 52.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.7e-09 65.1 58 51.7
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 2.7e-09 65.1 58 51.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.7e-09 65.1 58 51.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 3.5e-09 64.7 58 51.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.5e-09 64.7 57 52.6
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 4.5e-09 64.3 37 83.8
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.5e-09 64.3 64 54.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-08 62.0 64 45.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 6.5e-08 60.5 64 40.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.5e-07 59.3 82 45.1
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.9e-07 58.9 57 49.1
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 9.4e-07 56.6 40 67.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.2e-06 56.2 64 53.1


User provided reference genes

Program Settings