Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 7.6e-142 507.3 281 100.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 7.6e-142 507.3 281 100.0
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-79 300.4 276 64.5
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.0e-78 296.6 276 64.5
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.5e-76 290.4 276 62.3
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.6e-75 285.8 280 61.8
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 4.7e-75 285.4 278 61.9
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 8.0e-75 284.6 280 61.4
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.0e-75 284.6 276 61.6
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-74 282.3 276 61.6
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.2e-73 280.8 274 61.3
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.3e-72 277.3 276 60.1
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.2e-72 276.6 293 60.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.2e-72 276.6 279 60.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.4e-71 273.1 278 59.7
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 7.0e-71 271.6 293 59.0
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.7e-70 269.6 291 58.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.7e-70 269.6 276 59.1
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 3.5e-70 269.2 277 57.8
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.5e-70 269.2 275 58.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.0e-69 267.7 276 58.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.3e-69 267.3 276 60.1
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.7e-69 266.9 276 56.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.7e-69 266.9 276 57.6
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.8e-69 265.8 276 58.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 5.0e-69 265.4 276 58.0
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.1e-68 264.2 278 57.9
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.9e-68 263.5 272 58.1
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 3.2e-68 262.7 279 58.1
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 3.2e-68 262.7 281 56.2
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.8e-67 259.6 276 57.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 4.7e-67 258.8 285 55.4
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 4.7e-67 258.8 276 58.7
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.0e-66 257.7 218 65.6
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.4e-66 257.3 277 56.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 2.3e-66 256.5 276 57.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.3e-66 256.5 285 55.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.0e-66 256.1 288 55.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.2e-66 255.4 236 62.7
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 8.9e-66 254.6 231 64.5
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 8.9e-66 254.6 279 56.6
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.2e-65 254.2 275 56.0
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.2e-65 254.2 312 51.0
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.2e-65 254.2 276 56.9
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.5e-65 253.8 316 51.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 2.6e-65 253.1 279 56.3
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 4.4e-65 252.3 279 57.0
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 4.4e-65 252.3 276 56.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.7e-65 251.9 276 55.4
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 9.8e-65 251.1 279 56.6
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-64 250.8 288 55.2
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.3e-64 250.8 276 56.5
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.2e-64 250.0 276 55.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 4.9e-64 248.8 277 56.0
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.9e-64 248.8 288 54.9
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 8.3e-64 248.1 278 55.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 8.3e-64 248.1 297 52.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.1e-63 247.7 279 55.9
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-63 247.7 279 55.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-63 247.7 279 57.0
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.1e-63 247.7 276 56.2
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.8e-63 246.9 276 53.6
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.4e-63 246.5 273 56.8
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 4.1e-63 245.7 277 54.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.0e-63 245.0 276 55.8
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.0e-63 245.0 282 54.6
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 7.0e-63 245.0 274 54.4
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.6e-62 243.8 276 54.0
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.6e-62 243.8 282 54.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.7e-62 243.0 276 54.7
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 3.5e-62 242.7 276 54.0
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 3.5e-62 242.7 284 54.6
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 7.8e-62 241.5 286 53.8
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 5.0e-61 238.8 282 53.9
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.6e-61 238.4 255 56.1
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.1e-60 237.7 276 52.2
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.9e-60 236.9 216 62.0
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.6e-60 235.3 276 52.5
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-59 234.2 271 53.5
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.6e-59 233.8 276 54.0
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 3.6e-59 232.6 256 56.6
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.7e-59 232.3 275 53.8
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.1e-59 231.9 276 52.9
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.4e-58 230.7 277 52.0
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.4e-58 230.7 276 53.3
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.4e-58 230.7 278 51.8
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.4e-58 230.7 224 62.9
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.4e-58 230.7 231 58.9
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-58 229.2 288 51.4
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 5.2e-58 228.8 281 50.9
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 6.8e-58 228.4 282 50.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 8.9e-58 228.0 248 56.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.2e-57 227.6 279 53.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 3.4e-57 226.1 277 50.9
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.4e-57 226.1 278 51.1
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.9e-56 223.0 279 51.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.7e-56 222.6 295 50.8
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 6.4e-56 221.9 292 47.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.4e-55 219.9 224 57.1
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 2.4e-55 219.9 291 49.5
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.2e-55 219.5 298 49.0
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.1e-55 219.2 309 48.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.1e-55 219.2 294 48.6
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.2e-54 217.6 277 52.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.7e-54 216.5 276 51.4
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.0e-53 214.5 287 48.4
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.0e-53 214.5 221 57.5
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-53 213.4 279 50.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 3.0e-53 213.0 275 52.0
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 5.0e-53 212.2 279 50.2
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.9e-52 210.3 279 50.2
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.5e-52 209.9 241 57.7
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.3e-52 209.5 293 45.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.6e-51 207.2 271 49.8
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-50 204.5 291 48.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 3.1e-50 203.0 237 54.4
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-49 200.7 277 47.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 4.4e-49 199.1 220 56.4
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.4e-49 199.1 276 47.5
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 4.4e-49 199.1 274 48.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 7.5e-49 198.4 220 56.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.3e-48 197.6 277 46.9
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.7e-48 197.2 276 47.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.0e-46 190.3 291 43.0
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.7e-46 189.9 230 50.9
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.8e-43 179.9 172 59.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.1e-42 177.9 278 43.2
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.3e-42 176.8 284 43.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 4.0e-42 176.0 291 42.3
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.0e-42 176.0 260 45.4
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 6.8e-42 175.3 152 65.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 6.8e-42 175.3 250 46.4
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.1e-39 166.0 208 45.7
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 5.4e-39 165.6 157 61.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.9e-37 159.5 199 53.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 8.6e-37 158.3 268 42.9
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.5e-36 154.8 246 47.2
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 9.5e-36 154.8 221 43.4
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 6.2e-35 152.1 255 43.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.0e-34 149.4 215 42.3
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 4.4e-33 146.0 226 37.6
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 7.1e-31 138.7 180 52.8
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.1e-31 138.7 179 48.6
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-30 137.9 230 40.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.0e-29 134.8 219 39.3
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.1e-26 124.8 94 69.1
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.4e-26 124.4 281 35.6
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 7.6e-25 118.6 91 71.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 7.6e-25 118.6 150 46.0
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.4e-23 114.4 157 49.0
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 2.1e-22 110.5 135 54.1
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.1e-20 104.8 82 67.1
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.5e-20 104.4 172 41.9
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.6e-19 99.8 248 35.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.5e-17 94.4 91 57.1
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.2e-16 90.5 257 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.1e-15 88.2 162 38.3
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 4.2e-15 86.3 57 71.9
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.6e-14 84.3 220 32.7
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.7e-14 83.6 76 67.1
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-13 80.9 157 36.9
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.9e-12 77.4 90 51.1
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 9.6e-12 75.1 175 35.4
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.2e-09 68.2 138 37.7
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 4.9e-08 62.8 252 25.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 3.2e-07 60.1 117 43.6
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 3.2e-07 60.1 104 43.3
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 4.2e-07 59.7 148 39.2
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.6e-06 57.8 97 47.4
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 7.9e-06 55.5 131 36.6


User provided reference genes

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