Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.4e-66 256.1 132 100.0
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.9e-32 141.7 75 96.0
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.2e-19 99.4 68 75.0
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.1e-17 91.3 68 67.6
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 6.7e-16 87.8 68 64.7
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.7e-16 87.8 68 66.2
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 8.8e-16 87.4 68 66.2
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 4.4e-15 85.1 68 63.2
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 4.4e-15 85.1 61 68.9
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.4e-15 84.3 68 63.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.4e-15 84.3 68 63.2
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 9.7e-15 84.0 61 68.9
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.3e-14 83.6 68 60.3
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.7e-14 83.2 61 65.6
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 2.2e-14 82.8 68 60.3
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 2.2e-14 82.8 68 61.8
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.8e-14 82.4 61 65.6
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.8e-14 82.4 61 65.6
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 3.7e-14 82.0 68 58.8
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.8e-14 81.6 68 55.9
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 6.3e-14 81.3 68 60.3
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 8.2e-14 80.9 68 57.4
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 8.2e-14 80.9 68 60.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 1.4e-13 80.1 68 57.4
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.4e-13 79.3 68 61.8
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 3.1e-13 79.0 68 52.9
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 3.1e-13 79.0 68 61.8
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 7.0e-13 77.8 62 56.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 9.1e-13 77.4 59 66.1
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 9.1e-13 77.4 63 63.5
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 9.1e-13 77.4 68 55.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 1.6e-12 76.6 68 55.9
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 1.6e-12 76.6 68 58.8
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 2.0e-12 76.3 68 58.8
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 2.0e-12 76.3 61 62.3
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 2.0e-12 76.3 61 62.3
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.6e-12 75.9 68 52.9
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.6e-12 75.9 58 63.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 2.6e-12 75.9 68 57.4
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.5e-12 75.1 68 54.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 4.5e-12 75.1 68 60.3
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 5.9e-12 74.7 68 50.0
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 5.9e-12 74.7 68 54.4
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.9e-12 74.7 68 51.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 7.7e-12 74.3 62 58.1
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 7.7e-12 74.3 68 54.4
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.0e-11 73.9 68 48.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.0e-11 73.9 61 59.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.3e-11 73.6 68 48.5
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 1.3e-11 73.6 68 52.9
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 1.3e-11 73.6 63 61.9
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.2e-11 72.8 62 56.5
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 2.2e-11 72.8 68 54.4
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.9e-11 72.4 68 52.9
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 3.8e-11 72.0 62 56.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 3.8e-11 72.0 69 52.2
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 6.5e-11 71.2 68 51.5
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 8.5e-11 70.9 68 52.9
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 8.5e-11 70.9 68 47.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 8.5e-11 70.9 68 47.1
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 1.1e-10 70.5 68 47.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.1e-10 70.5 61 57.4
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.1e-10 70.5 68 47.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.5e-10 70.1 62 53.2
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.5e-10 70.1 68 50.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.9e-10 69.7 61 57.4
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.9e-10 69.7 62 53.2
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 2.5e-10 69.3 68 51.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.2e-10 68.9 68 45.6
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.2e-10 68.6 68 48.5
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 5.5e-10 68.2 68 48.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 5.5e-10 68.2 70 54.3
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 5.5e-10 68.2 62 51.6
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.2e-09 67.0 68 45.6
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-09 67.0 68 45.6
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-09 67.0 68 45.6
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-09 67.0 68 45.6
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.6e-09 66.6 45 73.3
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.7e-09 65.9 68 50.0
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 2.7e-09 65.9 68 44.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.6e-09 65.5 68 47.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 3.6e-09 65.5 68 47.1
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 3.6e-09 65.5 61 50.8
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 4.7e-09 65.1 62 50.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 4.7e-09 65.1 62 50.0
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 6.1e-09 64.7 62 50.0
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 6.1e-09 64.7 61 50.8
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 8.0e-09 64.3 64 54.7
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.0e-08 63.9 62 48.4
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.4e-08 63.5 68 41.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.3e-08 62.8 68 44.1
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.5e-07 60.1 86 44.2
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 3.3e-07 58.9 61 47.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 9.7e-07 57.4 68 51.5
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.7e-06 56.6 42 64.3


User provided reference genes

Program Settings