Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.7e-112 408.3 220 100.0
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.7e-112 408.3 220 100.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 7.1e-95 350.9 211 88.6
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.2e-94 350.1 211 88.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 9.6e-92 340.5 211 87.2
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.2e-88 329.3 211 83.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.8e-88 328.6 210 83.3
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 8.4e-88 327.4 211 83.9
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.4e-87 326.6 211 82.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 2.4e-87 325.9 213 82.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 4.2e-87 325.1 212 82.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 4.2e-87 325.1 211 83.4
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.5e-87 324.7 210 84.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 5.5e-87 324.7 213 81.2
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 7.1e-87 324.3 212 83.0
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.1e-87 324.3 213 81.7
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.3e-87 323.9 210 82.4
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.3e-87 323.9 210 82.4
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.2e-86 323.6 211 83.4
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-86 323.2 211 82.5
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.1e-86 322.8 210 81.9
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.1e-86 322.8 211 82.9
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.1e-86 322.8 211 82.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.1e-86 322.8 210 82.9
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 2.7e-86 322.4 209 83.3
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.7e-86 322.4 211 82.0
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.7e-86 322.4 213 81.2
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.5e-86 322.0 210 81.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.0e-86 321.2 210 81.4
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.0e-85 320.5 211 83.4
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.8e-85 319.7 213 80.8
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 2.3e-85 319.3 211 82.0
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 3.0e-85 318.9 212 82.1
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 3.0e-85 318.9 220 78.2
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 6.7e-85 317.8 209 81.3
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 8.7e-85 317.4 209 81.8
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 8.7e-85 317.4 213 80.3
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.1e-84 317.0 210 81.4
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.5e-84 316.6 213 80.3
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.5e-84 315.8 210 80.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 4.3e-84 315.1 209 80.4
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 5.6e-84 314.7 211 80.1
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.6e-84 314.7 220 78.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.6e-84 314.7 220 78.2
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 5.6e-84 314.7 211 80.6
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.6e-83 313.2 212 79.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.1e-83 312.8 211 78.2
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 2.1e-83 312.8 214 80.8
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.8e-83 312.4 211 80.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 4.8e-83 311.6 212 78.8
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 6.2e-83 311.2 211 80.6
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 8.1e-83 310.8 211 79.6
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 8.1e-83 310.8 211 78.7
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-82 310.5 209 80.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-82 310.5 211 80.1
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.4e-82 310.1 211 79.1
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 4.0e-82 308.5 205 82.0
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.5e-81 305.1 213 77.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 4.5e-81 305.1 205 79.5
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.8e-81 304.7 211 77.7
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 7.6e-81 304.3 211 77.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-80 303.5 211 78.7
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 1.7e-80 303.1 211 76.3
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.2e-80 302.8 223 76.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.8e-80 302.0 225 74.2
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.5e-79 299.3 211 78.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.6e-78 296.6 211 77.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.1e-78 296.2 215 76.3
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.7e-77 290.8 240 69.6
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.3e-76 288.9 210 76.2
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 4.3e-76 288.5 205 76.6
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.7e-76 288.1 209 76.1
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.6e-75 286.6 210 75.2
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.1e-75 286.2 202 75.7
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.1e-75 286.2 210 76.2
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.1e-75 286.2 242 67.8
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.7e-75 285.4 205 75.6
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.8e-75 285.0 204 76.0
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 4.8e-75 285.0 212 72.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 6.3e-75 284.6 205 75.1
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 8.2e-75 284.3 234 72.2
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 8.2e-75 284.3 211 74.9
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.2e-75 284.3 213 74.6
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.1e-74 283.9 200 77.5
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-74 283.5 205 75.1
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.4e-74 282.7 213 76.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 3.1e-74 282.3 205 75.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 3.1e-74 282.3 205 75.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.0e-73 279.6 212 73.1
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 4.5e-73 278.5 210 74.3
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.8e-72 275.4 199 74.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 5.0e-72 275.0 219 72.1
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.1e-71 273.9 186 80.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.1e-71 273.9 212 70.8
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.9e-71 273.1 212 71.2
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.5e-71 271.6 202 74.8
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.2e-70 270.4 210 71.9
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 6.1e-70 268.1 200 74.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.3e-69 266.9 199 74.4
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.8e-67 258.5 210 71.0
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-66 256.9 185 77.3
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 9.0e-66 254.2 181 76.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.6e-65 252.7 183 76.0
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.4e-65 252.3 202 71.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.3e-64 250.4 179 77.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.7e-64 250.0 234 64.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 6.5e-64 248.1 213 67.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.4e-61 240.4 210 68.1
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.2e-54 217.2 147 81.6
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.2e-54 217.2 143 81.1
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 7.4e-52 208.0 214 57.9
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.8e-50 203.4 136 79.4
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.5e-49 199.1 124 89.5
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-47 193.7 214 56.5
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.7e-46 189.5 194 59.3
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.1e-42 177.6 130 77.7
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-40 170.6 126 76.2
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.6e-38 162.5 98 89.8
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.5e-28 130.6 211 46.0
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 2.4e-26 123.2 93 69.9
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 8.6e-24 114.8 66 92.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.1e-22 110.2 217 39.6
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 5.7e-20 102.1 131 50.4
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.6e-16 88.2 52 88.5
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-15 87.8 50 92.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-15 87.8 50 92.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-15 87.8 50 92.0
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.5e-15 86.7 49 93.9
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.8e-13 80.5 189 36.5
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.3e-08 64.3 49 77.6
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 6.6e-08 62.0 157 32.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.3e-07 59.7 121 42.1
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 1.2e-06 57.8 55 60.0
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 1.6e-06 57.4 33 93.9
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 6.2e-06 55.5 181 28.2


User provided reference genes

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