Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28788 Selenicereus undatus HOM05D000730 ORTHO05D018831 1.5e-107 392.9 200 100.0
Hund28789 Selenicereus undatus HOM05D000730 ORTHO05D018831 1.5e-107 392.9 200 100.0
AUR62017277 Chenopodium quinoa HOM05D000730 ORTHO05D000578 8.0e-53 211.1 176 65.3
AUR62010634 Chenopodium quinoa HOM05D000730 ORTHO05D000578 1.3e-50 203.8 235 51.5
Ah.12g057520 Amaranthus hybridus HOM05D000730 ORTHO05D000578 7.7e-48 194.5 161 61.5
Sc22g0000270 Simmondsia chinensis HOM05D000730 ORTHO05D000578 1.3e-39 167.2 169 52.7
TAR375G0386 Trochodendron aralioides HOM05D000730 ORTHO05D000578 1.5e-38 163.7 183 50.8
EL10Ac5g12746 Beta vulgaris HOM05D000730 ORTHO05D000578 1.0e-36 157.5 182 49.5
Manes.01G065400 Manihot esculenta HOM05D000730 ORTHO05D000578 2.3e-36 156.4 174 50.6
Prupe.5G093000 Prunus persica HOM05D000730 ORTHO05D000578 3.0e-36 156.0 169 49.7
Thecc.03G272900 Theobroma cacao HOM05D000730 ORTHO05D000578 4.4e-35 152.1 174 48.9
Ciclev10023740m.g Citrus clementina HOM05D000730 ORTHO05D000578 3.7e-34 149.1 184 44.0
Haze_08931 Corylus avellana HOM05D000730 ORTHO05D000578 1.1e-33 147.5 176 50.0
AL6G46270 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 4.1e-33 145.6 189 45.0
COL.COLO4_05255 Corchorus olitorius HOM05D000730 ORTHO05D000578 7.8e-32 141.4 174 44.8
Duzib068G0713 Durio zibethinus HOM05D000730 ORTHO05D000578 1.0e-31 141.0 169 47.3
AT4G11670 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 2.3e-31 139.8 189 42.9
MBI12_g43910_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 3.0e-31 139.4 193 44.6
QL12p017589 Quercus lobata HOM05D000730 ORTHO05D000578 1.5e-30 137.1 176 46.0
A09p27470 Brassica napus HOM05D000730 ORTHO05D000578 5.6e-30 135.2 193 44.0
BraA09t38315Z Brassica rapa HOM05D000730 ORTHO05D000578 7.3e-30 134.8 193 44.0
Potri.001G108400 Populus trichocarpa HOM05D000730 ORTHO05D000578 7.3e-30 134.8 172 47.1
Sabra01G0081900 Salix brachista HOM05D000730 ORTHO05D000578 9.5e-30 134.4 171 46.2
MELO3C014023.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.7e-29 132.1 175 44.6
TWI81G0743 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 4.7e-29 132.1 175 44.0
C09p34790 Brassica napus HOM05D000730 ORTHO05D000578 6.2e-29 131.7 193 43.5
BolC9t56324H Brassica oleracea HOM05D000730 ORTHO05D000578 2.3e-28 129.8 190 43.7
Thhalv10028371m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 3.1e-28 129.4 189 41.8
CARHR254700 Cardamine hirsuta HOM05D000730 ORTHO05D000578 6.8e-28 128.3 170 44.1
ClCG00G000280 Citrullus lanatus HOM05D000730 ORTHO05D000578 6.8e-28 128.3 175 44.0
ClCG00G001770 Citrullus lanatus HOM05D000730 ORTHO05D000578 6.8e-28 128.3 175 44.0
Gohir.D03G153300 Gossypium hirsutum HOM05D000730 ORTHO05D000578 6.8e-28 128.3 177 44.6
Nn6g34206 Nelumbo nucifera HOM05D000730 ORTHO05D000578 1.2e-27 127.5 174 44.3
Sp6g05800 Schrenkiella parvula HOM05D000730 ORTHO05D000578 3.4e-27 125.9 189 43.4
MD00G1110400 Malus domestica HOM05D000730 ORTHO05D000578 4.4e-27 125.6 175 45.7
GSVIVG01019827001 Vitis vinifera HOM05D000730 ORTHO05D000578 4.4e-27 125.6 185 42.7
PGR042G2616 Punica granatum HOM05D000730 ORTHO05D000578 5.8e-27 125.2 175 46.3
Gorai.003G160900 Gossypium raimondii HOM05D000730 ORTHO05D000578 7.5e-27 124.8 177 44.1
THA.LOC104806377 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 2.9e-26 122.9 192 40.1
Actinidia02031 Actinidia chinensis HOM05D000730 ORTHO05D000578 2.4e-25 119.8 176 41.5
FvH4_5g01750 Fragaria vesca HOM05D000730 ORTHO05D000578 2.4e-25 119.8 170 41.8
Peaxi162Scf00714g00334 Petunia axillaris HOM05D000730 ORTHO05D000578 9.2e-25 117.9 170 41.8
Sed0026891 Sechium edule HOM05D000730 ORTHO05D000578 2.7e-24 116.3 170 42.9
Lj8A236G37 Lonicera japonica HOM05D000730 ORTHO05D033907 3.5e-24 115.9 195 40.0
Nitab4.5_0003924g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 6.0e-24 115.2 169 40.2
Aqoxy5G03962 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 1.0e-23 114.4 171 40.9
Cc08_g14160 Coffea canephora HOM05D000730 ORTHO05D000578 1.0e-23 114.4 169 44.4
Eucgr.E00552 Eucalyptus grandis HOM05D000730 ORTHO05D000578 3.9e-23 112.5 169 42.6
SGA_v2.0_scaffold343G49460 Striga asiatica HOM05D000730 ORTHO05D000578 5.0e-23 112.1 179 38.5
SalBow6G3932 Salvia bowleyana HOM05D000730 ORTHO05D000578 6.6e-23 111.7 177 40.1
Solyc08g080520.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 8.6e-23 111.3 174 39.1
FAN04G2748 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.1e-22 110.9 180 39.4
Sopen08g028840 Solanum pennellii HOM05D000730 ORTHO05D000578 2.5e-22 109.8 174 38.5
ATR0757G158 Amborella trichopoda HOM05D000730 ORTHO05D000578 5.6e-22 108.6 170 38.8
RcHm_v2.0_Chr7g0198971 Rosa chinensis HOM05D000730 ORTHO05D000578 2.8e-21 106.3 169 41.4
CANSAT21G0309 Cannabis sativa HOM05D000730 ORTHO05D000578 3.6e-21 105.9 174 39.1
ECA246G5324 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.6e-21 105.9 176 43.8
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 4.7e-21 105.5 203 37.4
CAN.G981.11 Capsicum annuum HOM05D000730 ORTHO05D018831 6.2e-21 105.1 178 38.8
Oeu029784.2 Olea europaea HOM05D000730 ORTHO05D000578 8.1e-21 104.8 169 37.9
Migut.A00938 Erythranthe guttata HOM05D000730 ORTHO05D000578 1.1e-20 104.4 124 46.0
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 1.8e-20 103.6 203 37.9
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 6.8e-20 101.7 203 37.4
DCAR_004665 Daucus carota HOM05D000730 ORTHO05D000578 1.2e-19 100.9 179 36.3
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 1.2e-19 100.9 203 37.4
Dinv44710 Davidia involucrata HOM05D000730 ORTHO05D000578 2.6e-19 99.8 192 35.9
Duzib128G1742 Durio zibethinus HOM05D000730 ORTHO05D000578 2.6e-19 99.8 203 36.9
HanXRQChr06g0165441 Helianthus annuus HOM05D000730 ORTHO05D000578 2.6e-19 99.8 178 42.7
Lsat_1_v5_gn_3_8441 Lactuca sativa HOM05D000730 ORTHO05D000578 3.4e-19 99.4 172 42.4
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 3.4e-19 99.4 203 36.0
CANSAT56G2780 Cannabis sativa HOM05D000730 ORTHO05D000578 3.7e-18 95.9 106 48.1
Duzib114G0880 Durio zibethinus HOM05D000730 ORTHO05D000578 3.7e-18 95.9 108 50.0
HPP92_007385 Vanilla planifolia HOM05D000730 ORTHO05D000578 4.9e-18 95.5 189 37.6
PSO339G1614 Papaver somniferum HOM05D000730 ORTHO05D000578 6.4e-18 95.1 176 39.2
PSO384G0089 Papaver somniferum HOM05D000730 ORTHO05D000578 6.4e-18 95.1 176 39.2
CDE09G0864 Ceratophyllum demersum HOM05D000730 ORTHO05D000578 1.1e-17 94.4 192 34.4
CsaV3_3G003550 Cucumis sativus L. HOM05D000730 ORTHO05D000578 1.1e-17 94.4 175 38.3
Os04g0568850 Oryza sativa ssp. japonica HOM05D000730 ORTHO05D018831 1.4e-17 94.0 111 47.7
Aa31LG9G10680 Aethionema arabicum HOM05D000730 ORTHO05D000578 1.9e-17 93.6 189 37.0
MBI19_g36134_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 2.4e-17 93.2 194 34.5
MD02G1278500 Malus domestica HOM05D000730 ORTHO05D000578 3.2e-17 92.8 213 31.9
Nn7g36786 Nelumbo nucifera HOM05D000730 ORTHO05D000578 3.2e-17 92.8 192 33.3
FAN08G1404 Fragaria x ananassa HOM05D000730 ORTHO05D000578 7.1e-17 91.7 178 36.0
AUR62031742 Chenopodium quinoa HOM05D000730 ORTHO05D000578 9.2e-17 91.3 138 39.9
Prupe.2G042100 Prunus persica HOM05D000730 ORTHO05D000578 9.2e-17 91.3 106 47.2
Migut.B01242 Erythranthe guttata HOM05D000730 ORTHO05D000578 2.1e-16 90.1 148 38.5
THA.LOC104799323 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 2.1e-16 90.1 108 45.4
CARHR206170 Cardamine hirsuta HOM05D000730 ORTHO05D000578 2.7e-16 89.7 108 42.6
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 2.7e-16 89.7 213 31.9
Rhsim07G0068600 Rhododendron simsii HOM05D000730 ORTHO05D000578 2.7e-16 89.7 106 46.2
AL6G17130 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 3.5e-16 89.4 108 43.5
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 4.6e-16 89.0 105 47.6
CAN.G134.13 Capsicum annuum HOM05D000730 ORTHO05D000578 4.6e-16 89.0 120 41.7
Cpa.g.sc169.47 Carica papaya HOM05D000730 ORTHO05D000578 4.6e-16 89.0 113 46.9
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 4.6e-16 89.0 106 47.2
RcHm_v2.0_Chr1g0326411 Rosa chinensis HOM05D000730 ORTHO05D000578 4.6e-16 89.0 106 46.2
Sopen01g040270 Solanum pennellii HOM05D000730 ORTHO05D000578 4.6e-16 89.0 120 41.7
Carub.0006s0590 Capsella rubella HOM05D000730 ORTHO05D000578 6.0e-16 88.6 108 43.5
Mapoly0125s0045 Marchantia polymorpha HOM05D000730 ORTHO05D000578 6.0e-16 88.6 193 31.1
SGA_v2.0_scaffold124G33604 Striga asiatica HOM05D000730 ORTHO05D000578 6.0e-16 88.6 106 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4217 Anthoceros agrestis HOM05D000730 ORTHO05D000578 7.8e-16 88.2 202 31.2
AT5G06970 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 7.8e-16 88.2 108 43.5
Nitab4.5_0002838g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 7.8e-16 88.2 123 43.9
Nitab4.5_0005420g0020 Nicotiana tabacum HOM05D000730 ORTHO05D000578 7.8e-16 88.2 123 43.9
Peaxi162Scf00082g00018 Petunia axillaris HOM05D000730 ORTHO05D000578 7.8e-16 88.2 123 42.3
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 7.8e-16 88.2 119 43.7
Solyc01g096540.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 7.8e-16 88.2 120 41.7
Aqoxy2G00416 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 1.3e-15 87.4 130 42.3
FvH4_7g03630 Fragaria vesca HOM05D000730 ORTHO05D000578 1.3e-15 87.4 106 44.3
FAN03G3014 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.3e-15 87.4 106 44.3
FAN06G3967 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.3e-15 87.4 106 44.3
FAN10G2667 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.3e-15 87.4 106 44.3
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 1.3e-15 87.4 122 44.3
BcaC04g21166 Brassica carinata HOM05D000730 ORTHO05D000578 1.7e-15 87.0 192 36.5
Lalb_Chr19g0132961 Lupinus albus HOM05D000730 ORTHO05D000578 1.7e-15 87.0 106 44.3
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 1.7e-15 87.0 108 44.4
TWI60G0879 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 1.7e-15 87.0 131 38.9
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 2.3e-15 86.7 108 44.4
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 2.3e-15 86.7 108 44.4
Lj9A659G48 Lonicera japonica HOM05D000730 ORTHO05D000578 2.3e-15 86.7 105 44.8
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 3.0e-15 86.3 108 43.5
AUR62032627 Chenopodium quinoa HOM05D000730 ORTHO05D000578 3.0e-15 86.3 105 44.8
Sp6g35900 Schrenkiella parvula HOM05D000730 ORTHO05D000578 3.0e-15 86.3 108 42.6
Zm00001eb073730 Zea mays HOM05D000730 ORTHO05D000578 3.0e-15 86.3 193 34.7
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 3.9e-15 85.9 110 44.5
DCAR_006604 Daucus carota HOM05D000730 ORTHO05D000578 3.9e-15 85.9 129 41.1
CSS0030717 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D018831 5.1e-15 85.5 77 55.8
CSS0042423 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D018831 5.1e-15 85.5 77 55.8
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 5.1e-15 85.5 108 43.5
Psat4g145160 Pisum sativum HOM05D000730 ORTHO05D000578 5.1e-15 85.5 108 43.5
Potri.001G030100 Populus trichocarpa HOM05D000730 ORTHO05D000578 5.1e-15 85.5 103 43.7
GSVIVG01036645001 Vitis vinifera HOM05D000730 ORTHO05D000578 5.1e-15 85.5 188 35.1
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 1.9e-14 83.6 103 43.7
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 1.9e-14 83.6 203 32.5
Cc00_g07550 Coffea canephora HOM05D000730 ORTHO05D000578 2.5e-14 83.2 104 45.2
CsaV3_5G036910 Cucumis sativus L. HOM05D000730 ORTHO05D000578 2.5e-14 83.2 103 43.7
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 2.5e-14 83.2 124 41.1
Pp3c7_24310 Physcomitrium patens HOM05D000730 ORTHO05D000578 2.5e-14 83.2 202 30.2
Lj3g0012169 Lotus japonicus HOM05D000730 ORTHO05D000578 3.3e-14 82.8 108 41.7
MELO3C012490.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.3e-14 82.4 103 43.7
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 4.3e-14 82.4 108 42.6
Zm00001eb285140 Zea mays HOM05D000730 ORTHO05D000578 4.3e-14 82.4 106 41.5
Glyma.13G192900 Glycine max HOM05D000730 ORTHO05D000578 5.6e-14 82.0 203 32.0
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 5.6e-14 82.0 201 33.3
Hund15746 Selenicereus undatus HOM05D000730 ORTHO05D000578 5.6e-14 82.0 177 35.6
CiPaw.13G015400 Carya illinoinensis HOM05D000730 ORTHO05D000578 7.3e-14 81.6 101 43.6
SMO116G0331 Selaginella moellendorffii HOM05D000730 ORTHO05D000578 7.3e-14 81.6 193 31.1
Lalb_Chr03g0032161 Lupinus albus HOM05D000730 ORTHO05D000578 9.5e-14 81.3 108 40.7
Lsat_1_v5_gn_7_31081 Lactuca sativa HOM05D000730 ORTHO05D000578 1.2e-13 80.9 106 44.3
BcaC06g32528 Brassica carinata HOM05D000730 ORTHO05D000578 6.2e-13 78.6 101 42.6
Lalb_Chr01g0007391 Lupinus albus HOM05D000730 ORTHO05D000578 6.2e-13 78.6 199 32.2
HanXRQChr04g0119551 Helianthus annuus HOM05D000730 ORTHO05D000578 4.0e-12 75.9 106 43.4
Thhalv10012512m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 5.2e-12 75.5 108 37.0
unitig_52.g17227 Utricularia gibba HOM05D000730 ORTHO05D018831 1.2e-11 74.3 104 40.4
ECA236G3986 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.5e-11 73.9 135 37.8
Hma1.2p1_1468F.1_g285520 Hydrangea macrophylla HOM05D000730 ORTHO05D018831 1.5e-11 73.9 125 36.0
Haze_03002 Corylus avellana HOM05D000730 ORTHO05D000578 2.6e-11 73.2 126 38.1
EL10Ac2g02767 Beta vulgaris HOM05D000730 ORTHO05D000578 4.4e-11 72.4 119 39.5
BcaNung04208 Brassica carinata HOM05D000730 ORTHO05D000578 3.8e-10 69.3 90 42.2
A10p28770 Brassica napus HOM05D000730 ORTHO05D000578 3.8e-10 69.3 90 42.2
C09p69110 Brassica napus HOM05D000730 ORTHO05D000578 3.8e-10 69.3 90 42.2
BolC9t59655H Brassica oleracea HOM05D000730 ORTHO05D000578 3.8e-10 69.3 90 42.2
BraA10t44924Z Brassica rapa HOM05D000730 ORTHO05D000578 3.8e-10 69.3 90 42.2
Ciclev10003518m.g Citrus clementina HOM05D000730 ORTHO05D000578 6.4e-10 68.6 87 44.8
SalBow5G1057 Salvia bowleyana HOM05D000730 ORTHO05D000578 1.1e-09 67.8 77 48.1
CBR_g23529 Chara braunii HOM05D000730 ORTHO05D000578 1.4e-09 67.4 170 31.2
ClCG10G003540 Citrullus lanatus HOM05D000730 ORTHO05D000578 1.9e-09 67.0 61 54.1
Gohir.A03G018300 Gossypium hirsutum HOM05D000730 ORTHO05D000578 1.2e-08 64.3 117 35.0
ATR1096G139 Amborella trichopoda HOM05D000730 ORTHO05D000578 1.6e-08 63.9 164 29.3
Sabra01G0021600 Salix brachista HOM05D000730 ORTHO05D000578 2.7e-08 63.2 87 41.4
Ca_23976_v3 Cicer arietinum L. HOM05D000730 ORTHO05D000578 6.0e-08 62.0 83 36.1


User provided reference genes

Program Settings